Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq33 91.5 2e-13 >seq33 Length=3077319 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | | | ||||| ||||| |||||||| |||||||| || ||||||||||| Sbjct 3040643 CATCACTCCAAATCTCTGATACTCGGCTACTCTTTTCTCAAAGAAGTTTGTTTTTCCCTC 3040584 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATA 18761 | || || ||||||| || ||||| ||||||| ||||| || Sbjct 3040583 CAGAGAAATGGATTCCATGAAGTCAAAGGGATTTTCCACATTGTA 3040539 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| || || || |||| |||||| || | || | |||||||| || ||||| || | Sbjct 3039104 CCTCATCCCTGCTGATCAGTTCATTGGAGTAGGTCAGGCCAGGCATGAGGCCTCTCTTCT 3039045 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 ||| ||| | || | |||||| || || || ||||| || || || || |||||||||| Sbjct 3039044 TTAGCCAATAGATGGCAGCAAAGGAGCCTGAGAAGAAGATGCCCTCCACGGCTGCAAAAG 3038985 Query 19103 CAACTAGTC 19111 | || |||| Sbjct 3038984 CCACAAGTC 3038976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561899519867400