Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4 176 4e-38 seq92 107 2e-17 seq1597 105 5e-17 seq53 104 2e-16 >seq4 Length=9009805 Score = 176 bits (194), Expect = 4e-38 Identities = 395/589 (67%), Gaps = 10/589 (2%) Strand=Plus/Minus Query 549990 TAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTA 550049 |||| || ||||| ||| | || ||||| || |||||||||||||| || | || | Sbjct 6749612 TAGCCATTGGTATTGATCTGGGCACCACCTACTCTTGTGTTGGTGTTTTCCAGCACGGAA 6749553 Query 550050 AAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCA 550109 | || ||||| || ||||| |||||||| ||||| || ||||| || || | |||| Sbjct 6749552 AGGTGGAAATCATCGCCAACGATCAAGGCAACAGGACGACTCCCAGCTACGTCGCCTTCA 6749493 Query 550110 CGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTAC 550167 | || || ||| | |||| ||||| || || | |||| | ||| || || | Sbjct 6749492 CAGACACAGAAAGGCTCATTGGAGATGCTGCCAAGAACCAAGTTGCCCTG--AACCCCGC 6749435 Query 550168 CAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCA 550227 ||| || || |||||||| ||||| | ||||| |||| ||| |||| | || || Sbjct 6749434 CAACACAATCTTTGATGCCAAACGGCTCATTGGGAGAAAGTTTGATGACCCTGTGGTCCA 6749375 Query 550228 GGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATT-- 550285 | | ||||| || | ||||||||| | | || | || ||| || ||| | || Sbjct 6749374 GTCTGATATAAAACTCTGGCCTTTCAAGGTAGTCAGTGACAATGGGAAGCCTAAAGTTCG 6749315 Query 550286 -GAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 | || | | || |||| || | |||| || || | ||||| || ||||| Sbjct 6749314 GGTAG--AAT-ATAAAGGGGAAACAAAGGAYTTTTGTCCTGAGGAGATTTCTTCAATGGT 6749258 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGT 550404 ||| | ||||||| | | | || || ||| | || || | || | ||||||| Sbjct 6749257 TTTGGTTAAAATGAGAGAGATTGCTGAGGCGTTTCTGGGACAGAAGGTGTCAAATGCAGT 6749198 Query 550405 AATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACG 550464 || || || ||||| ||||| || |||||||| | ||||| || |||||||||||| Sbjct 6749197 CATTACAGTGCCAGCTTATTTCAACGACTCACAGAGGCAAGCCACCAAAGATGCTGGAGT 6749138 Query 550465 TATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATA 550524 || ||||||| || ||||| | || ||||| ||||| || || || || | || || Sbjct 6749137 RATCTCTGGACTGAACGTTCTGAGGATCATCAACGAACCCACAGCAGCAGCCATYGCTTA 6749078 Query 550525 TGGACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 || || |||||| || ||| | || || |||||||||||| Sbjct 6749077 CGGCCTGGATAAAGGGAAAAGAGGAGAGCGCAACGTGCTCATCTTTGAT 6749029 Score = 159 bits (176), Expect = 3e-33 Identities = 365/547 (67%), Gaps = 2/547 (0%) Strand=Plus/Minus Query 552039 TCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATT 552098 || |||||||| ||| |||| | || ||||| || | | | |||| | ||| | Sbjct 6754260 TCAGATCTCTTCAGAGGAACACTGGAGCCAGTTGAGAAGGCCCTGCAAGATGCCAAGCTG 6754201 Query 552099 GATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATT 552158 ||||| || || | ||||||||||| || |||||||| || |||||||| || ||||| Sbjct 6754200 GATAAGTCTAAGATCCATGAAATTGTCCTGGTTGGTGGTTCCACAAGAATACCCAAAATC 6754141 Query 552159 CGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGA 552217 | | | ||| || ||| ||| ||||||||| || | || |||| | || || || Sbjct 6754140 CAGAAGCTCTTACAGGACTTCTTT-AATGGTAAAGAACTGAACAAAAGCATCAACCCTGA 6754082 Query 552218 TGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGA 552277 ||| || || ||||||||||| || | || || ||||| || || | ||| || Sbjct 6754081 TGAAGCAGTGGCCTATGGTGCTGCGGTCCAGGCTGCTATCCTCATGGGCGACACTTCGGA 6754022 Query 552278 AAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGT 552337 || | || || | | || | ||||| | || || ||| | ||| | ||||| | Sbjct 6754021 GAACGTCCAGGATTTGCTGCTGCTGGATGTGGCACCCCTCTCTTTAGGTATCGAAACCGC 6753962 Query 552338 TGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCG 552397 || || ||||||| ||||||| | | || || || || || | || | ||| Sbjct 6753961 AGGTGGAGTTATGACGCCTCTTATCAAACGGAACACCACAATCCCCTCGAAGCAGACTCA 6753902 Query 552398 TGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGA 552457 | || || ||||| || ||||| || | | || ||||| | | ||||| || Sbjct 6753901 GATCTTCTCCACGTACTCTGATAACCAGCCAGGAGTACTGATTCAGGTGTACGAAGGTGA 6753842 Query 552458 AAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCC 552517 |||| | || ||||| || |||| ||||| | ||| | | |||||| || || Sbjct 6753841 AAGAGCTATGACCAAAGACAACAATCTGCTTGGGAGGTTTGAGCTCACAGGTATCCCACC 6753782 Query 552518 TGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTT 552577 |||||| | || || || ||||| || || || || || || |||||||| || ||| | Sbjct 6753781 AGCTCCTAGAGGTGTGCCACAAATCGAGGTAACCTTTGACATTGATGCCAACGGTATTCT 6753722 Query 552578 GAATGTG 552584 |||||| Sbjct 6753721 AAATGTG 6753715 Score = 158 bits (174), Expect = 1e-32 Identities = 362/544 (67%), Gaps = 2/544 (0%) Strand=Plus/Minus Query 552042 GATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGAT 552101 |||||||| ||| |||| | || ||||| || | | | |||| | ||| | ||| Sbjct 6748704 GATCTCTTCAGAGGAACACTGGAGCCAGTTGAGAAGGCCCTGCAAGATGCCAAGCTGGAT 6748645 Query 552102 AAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGC 552161 || || || | ||||||||||| || |||||||| || |||||||| || ||||| | Sbjct 6748644 AAGTCTAAGATCCATGAAATTGTCCTGGTTGGTGGTTCCACAAGAATACCCAAAATCCAG 6748585 Query 552162 GAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGA 552220 | | ||| || ||| ||| ||||||||| || | || |||| | || || ||||| Sbjct 6748584 AARCTCTTACAGGACTTCTTT-AATGGTAAAGAACTGAACAAAAGCATCAACCCTGATGA 6748526 Query 552221 GGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAA 552280 || || ||||||||||| || | || || ||||| || || | ||| || || Sbjct 6748525 AGCAGTGGCCTATGGTGCTGCGGTCCAGGCTGCTATCCTCATGGGCGACACTTCRGAGAA 6748466 Query 552281 ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGG 552340 | || || | | || | ||||| | || || ||| | ||| | ||||| | || Sbjct 6748465 CGTCCAGGATTTGCTGCTGCTGGATGTGGCGCCCCTCTCTTTAGGTATCGAAACCGCAGG 6748406 Query 552341 AGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGT 552400 || ||||||| ||||||| | | || || || || || | || | ||| | Sbjct 6748405 TGGAGTTATGACGCCTCTTATCAAACGGAACACCACAATCCCCTCGAAGCAGACTCAGAT 6748346 Query 552401 ATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAG 552460 || || ||||| || ||||| || | | || || || | | ||||| ||||| Sbjct 6748345 CTTCTCCACGTACTCTGATAACCAGCCAGGAGTACTGATWCAGGTGTACGAAGGTGAAAG 6748286 Query 552461 AAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGC 552520 | | || ||||| || |||| ||||| | ||| | | |||||| || || || Sbjct 6748285 AGCTATGACCAAAGACAACAATCTGCTTGGGAGGTTTGAGCTCACAGGTATCCCACCAGC 6748226 Query 552521 TCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAA 552580 |||| | || || || ||||| || || || || || || |||||||| || ||| | || Sbjct 6748225 TCCTAGAGGTGTGCCACAAATCGAGGTAACCTTTGACATTGATGCCAACGGTATTCTAAA 6748166 Query 552581 TGTG 552584 |||| Sbjct 6748165 TGTG 6748162 >seq92 Length=1742495 Score = 107 bits (118), Expect = 2e-17 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 ||||| || || || || |||||||| || || || ||||| |||||||| || ||| Sbjct 390602 ACTGTTCCCGCCTACTTCAATGACTCTCAGCGCCAGGCTACCAAAGATGCCGGGACAATT 390661 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 |||| ||||||||||| ||||| ||||| || || ||||||||||| |||| ||||| Sbjct 390662 TCTGGCCTTAATGTTCTGCGTATCATCAACGAGCCCACTGCTGCTGCCATTGCTTATGGC 390721 Query 550529 CTTGATAAA 550537 || || ||| Sbjct 390722 CTGGACAAA 390730 >seq1597 Length=45667 Score = 105 bits (116), Expect = 5e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || ||||| || ||||| || || || || ||||| || ||||| || || ||||||||| Sbjct 39467 GCTGTAATCACAGTACCTGCCTACTTCAACGACTCGCAGCGTCAGGCCACCAAAGATGCT 39526 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTT 550519 ||| || |||| || |||||||| || || ||||||||||| ||||||||||| || Sbjct 39527 GGAACCATCTCTGGTCTCAATGTTCTCCGAATCATCAATGAACCAACTGCTGCTGCTATT 39586 Query 550520 GCATATGG 550527 || || || Sbjct 39587 GCCTACGG 39594 >seq53 Length=2629213 Score = 104 bits (114), Expect = 2e-16 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| ||||| || || || || || |||||||| || || ||||| || ||||||| Sbjct 110219 ATGCAGTTATAACAGTTCCTGCTTACTTCAATGACTCCCAGCGCCAAGCCACCAAAGATG 110278 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || |||| || ||||| || ||||| || |||||||| || || ||||| Sbjct 110279 CTGGAACAATCTCTGGTCTCAATGTGCTGCGTATCATTAATGAACCCACAGCCGCTGCCA 110338 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| || || || || ||| Sbjct 110339 TTGCTTACGGCCTGGACAAA 110358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027720834869650