Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq101 156 3e-33 >seq101 Length=1578606 Score = 156 bits (172), Expect = 3e-33 Identities = 140/176 (80%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 29858 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 29917 ||||| || || || | || ||| || |||||||| ||||| |||| ||||||||||| Sbjct 214014 CTCCCACCTCGAGTCCTGCGATGTGTGCGATCATGTAGGTGAGAAGAGCGTAGCTGGCGA 214073 Query 29918 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 29977 |||| || || ||||| || |||||||| |||| | |||||| |||||||| || |||| Sbjct 214074 TGTTGAAAGGCACCCCCAGACCCATGTCGGCCGAGCGCTGGTACAGCTGACAGGACAGCT 214133 Query 29978 CTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGG 30033 | ||||| | ||||| |||||||||| | |||||| || || |||||||||||| Sbjct 214134 CGCCGTCACAGACGTAGAACTGACACAGAGCGTGGCAGGGGGGCAGAGCCATGAGG 214189 Score = 125 bits (138), Expect = 6e-24 Identities = 143/189 (76%), Gaps = 10/189 (5%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 |||||| |||| ||||| || || || |||||||| |||||||| || || || ||||| Sbjct 215425 CATGTCTTTGTATTCTGCACCAAAGTGTCTCCACTGAAACCCGTAAACAGGACCGAGGTC 215484 Query 30210 TCCCTCTTC----CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30265 ||||| || ||||| |||||| ||||||| ||| ||| ||| ||||||| Sbjct 215485 CCCCTCCTCTCGGCCTGTA----AAGCCCAGGTTGTCCAGGAAGGCTCGGGACCCGTTGG 215540 Query 30266 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 30325 | ||||||||||| || || ||||| || ||||| |||| |||||| || || ||| ||| Sbjct 215541 CATCCCAGATCTTCACACCTTTCTCTGACAGCTCCTTGGCGTTTGTTGATCC-CTG-CGA 215598 Query 30326 ACCACAGCA 30334 | ||||| Sbjct 215599 CACGCAGCA 215607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408469269895805