Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq345 194 3e-44 seq558 114 2e-20 seq2653 111 3e-19 seq38 104 4e-17 seq33 96.9 6e-15 >seq345 Length=614307 Score = 194 bits (214), Expect = 3e-44 Identities = 841/1314 (64%), Gaps = 52/1314 (4%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGG-GCGCAAGACTG--CGTCAGG 221422 || ||||||| ||||||||| || ||||| |||| | || | ||| | ||| Sbjct 404199 CCTTCGTACGTCTCGTAGGGGCC---CAGTTTGGCCGCGAGCTCGCAGCTGGCCTCCAGA 404143 Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTG 221482 || |||| ||||||||||||||| ||| ||||||| || ||||| ||| Sbjct 404142 GCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGAGCCTCCGGACTTTCA 404083 Query 221483 AAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGC 221542 ||||| ||||| || ||| |||| || | ||||| |||||||| ||||| ||| Sbjct 404082 AAGGGGTAACGCATCAAGATGAAGGCGTCTGCTAAACCCTGGACTCCGATTCCGATCGGC 404023 Query 221543 CTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGA 221602 ||||| | ||||||| | || || || || || || |||||| || || | Sbjct 404022 CTGTGGCGTTTGTTGGACATCTCGGCCTCGGGGACCGGGTAGTAGTTGATTTCAATGATC 403963 Query 221603 TTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCA--GCTTCTGGTGATTGAACA 221660 ||||| | ||| ||||| | ||| | ||||| | | | || || || Sbjct 403962 TTGTTCAAGTTTT------TGACTAT---CACTTTGGTCACAGATGCCAGTTTTTTAAAG 403912 Query 221661 CCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGT 221720 || ||| || ||| || | | | | || || || | | ||||| | Sbjct 403911 TCATAAGTGCGC--TC----AGGCGTGACGTACATG--TTGAGAGCGATGGATGCCAGAT 403860 Query 221721 TACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGC 221780 | || || ||||||||||| | |||| || | | || ||| || || | |||||||| Sbjct 403859 TGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCACAAGTTGCTGC 403800 Query 221781 ACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCA 221840 |||||||||| ||||| | | || || ||| | ||| ||||| ||||| | || Sbjct 403799 ACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCTTTGTACAACA 403740 Query 221841 TAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-GCG 221899 | | || || |||||| ||| | | | | || || ||| || | ||| || Sbjct 403739 TGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGTACCAAAGCTG-CTGAGCT 403681 Query 221900 CTCACCGTCCTCTTGACTGCACCCTCGGT--CTTTTCATACCCGGTATAGAGCATGTCAA 221957 ||||| | ||| ||||||| | ||| || || || || ||| | |||| Sbjct 403680 TTCACCACACGCTT-----CACCCTCCCTTCCTTCTCGTATGTAGTGTACAGCTTCTCAA 403626 Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017 ||| || || | |||||| || || |||||| | ||||||||||||| ||||| Sbjct 403625 ACTCCTCCCCCCAGCACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGAGACCAGT 403566 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 || |||| | || | || |||||| ||||| ||||||||||| || | || || | Sbjct 403565 CCTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAAGGT 403506 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 |||||| | |||||||||| ||| |||| ||| |||| || | || ||||| | || Sbjct 403505 CTCTGGCTCTCTGCTCCTCCTTGCCAGTGTTCTTCTTCAGCTCTAGGAAGTCAAACACGT 403446 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 || ||||| ||||||| || | ||| | || ||||||| ||||||||||| |||| Sbjct 403445 CAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTGTTGCCACCTTGAT 403386 Query 222198 CCACCATCCTCTCCAGAG----CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGAT 222253 | | | | | || | |||| | | | || | || ||||| |||||||| Sbjct 403385 CGA----CGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGTTGGAG 403330 Query 222254 CGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCG 222313 |||||||| || ||||| || || || | | ||| | | | ||| Sbjct 403329 TTCCCGTTGGTACCGGCGATGTAGCTCCCAGTGGATCTGATGCAGCTGACCGCTACGCCA 403270 Query 222314 ATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCC 222373 || || ||||| || || || | |||||| ||| || ||||| |||||| || Sbjct 403269 ATGCCTCCGGCAGACTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCG 403210 Query 222374 ATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAG 222433 || ||| || || | | |||| || || |||| ||| | ||| | Sbjct 403209 ATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGCGGCCGATTGGTTCCT 403150 Query 222434 GCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTC 222493 ||||| || || || ||| |||||| || || | | |||| ||||| ||||||| Sbjct 403149 GCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAACCACTTCTCTGACAGCAGATTGTACGTC 403090 Query 222494 TCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTAC 222553 || | | | |||||| | |||||| ||| | | |||||| ||||| | Sbjct 403089 TCGATGGCCGCTTCGATGTCGGTCCCGTGGATCCCAACAGACACCCTCATGAGCATGTGC 403030 Query 222554 TGGGGCCTCTCCACAGGAC-CCTTGGAGCTG---GAGAGCAGGTACGATTTTTCCAGAGT 222609 || || | ||| || | ||||| | || ||||| || || |||||||| Sbjct 403029 TGCGGGCGCTC----GGCCACCTTGCCGTTGATTTTCAGCAGATAGGAGCGCTCCAGAGT 402974 Query 222610 CTTGAACCCAAAGTAGTTG-AGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGT 222662 |||||| || ||| ||||| ||| ||| |||||| | | || | ||||| || Sbjct 402973 CTTGAATCCGAAGAAGTTGTAGGAGAAA-TCTCTGTCATAAATGATGGCGGAGT 402921 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 221036 GAGCCCTTGTTGACCAAAAGCTCGGTACGCATCTCGTCCGTCCATAGACCCCTCTCTTCC 221095 ||||| |||||| | | |||| | | |||||| || |||| || |||||||| | Sbjct 404520 GAGCCGTTGTTGGCGATCAGCTTGTTCTTCATCTCCTCGTTCCACAGCCCCCTCTCCGTC 404461 Query 221096 AGCACCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGG 221155 || | |||| || || ||| || | ||||| ||||| ||||| ||||| | | Sbjct 404460 AGGTCTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTG 404401 Query 221156 TACAGGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTG 221215 || | ||| ||| ||| |||||| ||||||||||||||||||||| || ||| Sbjct 404400 TAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAC 404341 Query 221216 GCGGTGGGCATGGGTGCCACCAGCAGACTGTT 221247 || |||||||| || |||| |||||| ||||| Sbjct 404340 GCCGTGGGCATCGGCGCCAGCAGCAGGCTGTT 404309 >seq558 Length=349536 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || |||||| |||| || || |||||||||||||| ||||| ||| ||||||||| || Sbjct 123889 GGAGAGCGGGTGGTGGCGTTCGCTGCTGTGGAGGGGATCTTCTTCTCCGGTTCGTTCGCC 123830 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||| | ||| || || |||||||| ||| ||| |||||||||| Sbjct 123829 TCCATCTTCTGGTTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 123770 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 123769 ATCAGCAGAGACGAGG 123754 >seq2653 Length=13515 Score = 111 bits (122), Expect = 3e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| || || |||||||||||||| ||||| ||| ||||||||| || Sbjct 11483 GGAGAGCGTTTGGTGGCGTTCGCTGCTGTGGAGGGGATCTTCTTCTCCGGTTCGTTCGCC 11542 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||||||| | ||| || || |||||||| ||| ||| |||||||||| Sbjct 11543 TCCATCTTCTGGTTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCAGCAACGAGCTC 11602 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 11603 ATCAGCAGAGACGAGG 11618 >seq38 Length=2821725 Score = 104 bits (114), Expect = 4e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 221123 ACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATG 221182 || ||||| ||||| ||||||||||| | ||| | ||| ||| ||| ||||| Sbjct 1027534 ACCTGGAACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTCGTGTACGCCTCGATC 1027475 Query 221183 CTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGA 221242 |||||||||||||||||||||||||||| ||| |||||||| || |||| |||||| Sbjct 1027474 GACTCGTTGTTGCCCAGGATCTGAGCCGTGGAGGCCGTGGGCATCGGGGCCAACAGCAGG 1027415 Query 221243 CTGTT 221247 ||||| Sbjct 1027414 CTGTT 1027410 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 || || | ||| |||||||| |||||||||| || || |||||||||| || ||| Sbjct 1026147 ACTCTTTTCATAAAGAGGTCTGGGATCCACAAGGCGAAGAACAGATCTCTGGCCCTCTGT 1026088 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 || || ||| |||| ||| |||| |||| ||| ||||| | ||| | ||||||||| Sbjct 1026087 TCTTCTTTCCCGGTGTTCTTCTTCAGGTCCAGAAATTCAAACACGTCTGAATGCCACGGC 1026028 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGG 222177 ||||| || | || | || ||||| Sbjct 1026027 TCCAGGTACATAGCGAACGCCCCGGG 1026002 >seq33 Length=3077319 Score = 96.9 bits (106), Expect = 6e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| || || || ||||| || |||||||||||||| ||| || || ||||| Sbjct 3038969 GGGGAGCGACTTGTGGCTTTTGCAGCCGTGGAGGGCATCTTCTTCTCAGGCTCCTTTGCT 3039028 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||| ||||| ||| ||| || |||||| || ||| || ||||| || || Sbjct 3039029 GCCATCTATTGGCTAAAGAAGAGAGGCCTCATGCCTGGCCTGACCTACTCCAATGAACTG 3039088 Query 25993 ATCAGCAGGGACGAGG 26008 ||||||||||| |||| Sbjct 3039089 ATCAGCAGGGATGAGG 3039104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928498979470400