Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4 185 6e-41 seq53 111 1e-18 >seq4 Length=9009805 Score = 185 bits (204), Expect = 6e-41 Identities = 373/549 (68%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 || |||||||||||| | || || || ||| |||||| | ||||| || | || || Sbjct 6749610 GCCATTGGTATTGATCTGGGCACCACCTACTCTTGTGTTGGTGTTTTCCAGCACGGAAAG 6749551 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || ||||| || ||||| || ||||| || || || || || || || | || || Sbjct 6749550 GTGGAAATCATCGCCAACGATCAAGGCAACAGGACGACTCCCAGCTACGTCGCCTTCACA 6749491 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || ||| || |||||||||||||| || | |||| ||| || || | || Sbjct 6749490 GACACAGAAAGGCTCATTGGAGATGCTGCCAAGAACCAAGTTGCCCTGAACCCCGCCAAC 6749431 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || |||||||| ||| | | ||||| | || |||||||| | ||||| ||| Sbjct 6749430 ACAATCTTTGATGCCAAACGGCTCATTGGGAGAAAGTTTGATGACCCTGTGGTCCAGTCT 6749371 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATA---GAA 474625 ||||| | |||||||| ||||| | | || ||| || || | | | | Sbjct 6749370 GATATAAAACTCTGGCCTTTCAAGGTAGTCAGTGACAATGGGAAGCCTAAAGTTCGGGTA 6749311 Query 474626 GCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||| | ||| ||||| || | |||| || || | ||||||||||||||||| Sbjct 6749310 G-AATATAA--AGGGGAAACAAAGGAYTTTTGTCCTGAGGAGATTTCTTCAATGGTTTTG 6749254 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 | ||||||| | | | || ||| | | ||| ||||| | || | ||||||| || Sbjct 6749253 GTTAAAATGAGAGAGATTGCTGAG-GCGTTTCTGGGACAGAAGGTGTCAAATGCAGTCAT 6749195 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||| || ||||| ||||| || || || || | ||||| || |||||||| ||| || Sbjct 6749194 TACAGTGCCAGCTTATTTCAACGACTCACAGAGGCAAGCCACCAAAGATGCTGGAGTRAT 6749135 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 | || || || ||| | | || || || ||||| |||||||| || | ||||| || Sbjct 6749134 CTCTGGACTGAACGTTCTGAGGATCATCAACGAACCCACAGCAGCAGCCATYGCTTACGG 6749075 Query 474865 TCTTGATAA 474873 || ||||| Sbjct 6749074 CCTGGATAA 6749066 Score = 176 bits (194), Expect = 3e-38 Identities = 534/813 (66%), Gaps = 18/813 (2%) Strand=Plus/Minus Query 475363 AGCAACAGCTGGAGATTCACATCTTGGTGGTGAAGATTTTGATAATAGACTTGT--ATCA 475420 ||| ||| |||| || |||| |||||||| || || ||||| || || | || |||| Sbjct 6748966 AGCCACATCTGGGGACACACACCTTGGTGGGGAGGACTTTGACAACCGAATGGTCAATCA 6748907 Query 475421 TGGTGTGTTGAAGATTTCAAGAGGAA--AAATAAAGTTGATCTTTCAACATCTGCTAAAG 475478 | |||||| || || || || || | | ||| |||| || || | || Sbjct 6748906 C--TTTGTTGAGGAGTTTAAAAGAAARCACAGAAAAGACATCTCACAGAATAAA--AGAG 6748851 Query 475479 CATTAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCG-AGCTCTTTCTTCTGCTACT 475537 || | || | || | || || |||||| || ||| | | || | || | || ||| Sbjct 6748850 CAGTRAGGAGGCTGCGGACAGCCTGTGAAAAGGCAAAGAGGACCTTGTCCTCCAGC-ACT 6748792 Query 475538 CAAACTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGA-TTATAATACTCTTATTAC 475596 || ||| |||| | || ||||| ||||| || || || || || ||| || || Sbjct 6748791 CAGGCTAACATTGAGATCGACTCTCTGTTTGAGGGTATCGACTTCTACACCTCG-ATCAC 6748733 Query 475597 AAGGGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGA 475656 |||||| ||||| || | | |||||||| ||| |||| | || || ||||| Sbjct 6748732 AAGGGCCCGTTTTGAGGAGCTCAACWCRGATCTCTTCAGAGGAACACTGGAGCCAGTTGA 6748673 Query 475657 ACAAGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGG 475716 | | || |||| | || || || || || | ||||||||||||| || || || Sbjct 6748672 GAAGGCCCTGCAAGATGCCAAGCTGGATAAGTCTAAGATCCATGAAATTGTCCTGGTTGG 6748613 Query 475717 AGGTTCAACAAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAA 475775 ||||| |||||||| || ||||| |||| ||| || | | |||||||||||| Sbjct 6748612 TGGTTCCACAAGAATACCCAAAAT-CCAGAARCTCTTACAGGACTTCTTTAATGGTAAAG 6748554 Query 475776 AGTTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAG 475835 | | || |||| | || ||||||||||| || || ||||| ||||| ||||| || | Sbjct 6748553 AACTGAACAAAAGCATCAACCCTGATGAAGCAGTGGCCTATGGTGCTGCGGTCCAGGCTG 6748494 Query 475836 CTATTTTATCAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTC 475895 |||| | || | | ||||| | | || | | || | || || | | Sbjct 6748493 CTATCCTCATGGGCGACACTTCRGAGAACGTCCAGGATTTGCTGCTGCTGGATGTGGCGC 6748434 Query 475896 CACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATA 475955 | || || |||||| | ||||| | || || ||||||| |||||| | | || | Sbjct 6748433 CCCTCTCTTTAGGTATCGAAACCGCAGGTGGAGTTATGACGCCTCTTATCAAACGGAACA 6748374 Query 475956 CTCCTATCCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAAC 476013 | | ||||| | || | | ||| | | || ||||| || |||||||| || || Sbjct 6748373 CCACAATCCCCTCGAAGCAGACTCAGA--TCTTCTCCACGTACTCTGATAACCAGCCAGG 6748316 Query 476014 TGTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG 476073 ||| || || | | |||||||||||| | || ||||| || || ||||| Sbjct 6748315 AGTACTGATWCAGGTGTACGAAGGTGAAAGAGCTATGACCAAAGACAACAATCTGCTTGG 6748256 Query 476074 AACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTAC 476133 | ||| | || |||||| || || ||||| ||||| || || ||||| || || || Sbjct 6748255 GAGGTTTGAGCTCACAGGTATCCCACCAGCTCCTAGAGGTGTGCCACAAATCGAGGTAAC 6748196 Query 476134 TTTTGATATTGATGCAAATGGTATTCTTAATGT 476166 ||||| |||||||| || |||||||| ||||| Sbjct 6748195 CTTTGACATTGATGCCAACGGTATTCTAAATGT 6748163 Score = 167 bits (184), Expect = 2e-35 Identities = 372/550 (68%), Gaps = 10/550 (2%) Strand=Plus/Minus Query 475622 TCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCTAAACTT 475681 || |||||||| ||| |||| | || || ||||| | | || |||| | || || Sbjct 6754260 TCAGATCTCTTCAGAGGAACACTGGAGCCAGTTGAGAAGGCCCTGCAAGATGCCAAGCTG 6754201 Query 475682 GACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCAAAAATA 475741 || || || | ||||||||||||| || || || ||||| |||||||| || ||||| Sbjct 6754200 GATAAGTCTAAGATCCATGAAATTGTCCTGGTTGGTGGTTCCACAAGAATACCCAAAAT- 6754142 Query 475742 AGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGAAAGTGTAAATCCTGA 475800 |||| ||| || | | |||||||||||| | | || |||| | || ||||| Sbjct 6754141 CCAGAAGCTCTTACAGGACTTCTTTAATGGTAAAGAACTGAACAAAAGCATCAACCCTGA 6754082 Query 475801 TGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT-TTTATCAG-GTCAATCAGAC 475858 |||||| || || ||||| ||||| ||||| || ||||| | || | | || | | Sbjct 6754081 TGAAGCAGTGGCCTATGGTGCTGCGGTCCAGGCTGCTATCCTCATGGGCGACACTTCG-- 6754024 Query 475859 GAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTTGAAACA 475918 ||||| | | || | | || | || || | || || || |||||| | ||||| Sbjct 6754023 GAGAACGTCCAGGATTTGCTGCTGCTGGATGTGGCACCCCTCTCTTTAGGTATCGAAACC 6753964 Query 475919 GTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA--AAAAT 475976 | || || ||||||| |||||| | | || || | ||||| | || | | | Sbjct 6753963 GCAGGTGGAGTTATGACGCCTCTTATCAAACGGAACACCACAATCCCCTCGAAGCAGACT 6753904 Query 475977 CAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTTGAAG 476036 || | | || ||||| || |||||||| || || ||| || || | | |||| Sbjct 6753903 CAGA--TCTTCTCCACGTACTCTGATAACCAGCCAGGAGTACTGATTCAGGTGTACGAAG 6753846 Query 476037 GTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTC 476096 |||||||| | || ||||| || || ||||| | ||| | || |||||| | Sbjct 6753845 GTGAAAGAGCTATGACCAAAGACAACAATCTGCTTGGGAGGTTTGAGCTCACAGGTATCC 6753786 Query 476097 CTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTA 476156 | || ||||| ||||| || || ||||| || || || ||||| |||||||| || |||| Sbjct 6753785 CACCAGCTCCTAGAGGTGTGCCACAAATCGAGGTAACCTTTGACATTGATGCCAACGGTA 6753726 Query 476157 TTCTTAATGT 476166 |||| ||||| Sbjct 6753725 TTCTAAATGT 6753716 >seq53 Length=2629213 Score = 111 bits (122), Expect = 1e-18 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 476028 TCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTG 476087 ||| ||||||||||||| | ||||| || ||||||| || || | ||| | || Sbjct 111395 TCTATGAAGGTGAAAGAGCCATGACTAAGGACAATAACATCCTGGGGAAATTTGAACTGA 111454 Query 476088 AAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATG 476147 |||||||| |||||||||||||| || ||||| ||||| || || ||||| ||||||| Sbjct 111455 CCGGTATTCCACCTGCTCCCAGAGGCGTCCCTCAGATTGAGGTGACCTTTGACATTGATG 111514 Query 476148 CAAATGGTATTCTTAATGT 476166 | |||||||| || ||||| Sbjct 111515 CCAATGGTATCCTCAATGT 111533 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| || || ||||| || || || ||||| || || || ||||| || ||||||| Sbjct 110219 ATGCAGTTATAACAGTTCCTGCTTACTTCAATGACTCCCAGCGCCAAGCCACCAAAGATG 110278 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||| | ||||| ||||| | ||||| ||||||||||| ||||| || || Sbjct 110279 CTGGAACAATCTCTGGTCTCAATGTGCTGCGTATCATTAATGAACCCACAGCCGCTGCCA 110338 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 ||||||| || || || || || Sbjct 110339 TTGCTTACGGCCTGGACAAAAA 110360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266901576833180