Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq345 82.4 4e-11 >seq345 Length=614307 Score = 82.4 bits (90), Expect = 4e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 25921 CTCAACTTTCTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCT 25980 ||| ||| || ||| || | || || ||||||| ||||| || | ||||| ||||| Sbjct 403555 CTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAAGGTCTCTGGCTCT 403496 Query 25981 CATTTCTTCTTTTCC-GTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCC 26039 | || || || || ||| ||||| || || |||| ||| ||||| | || | |||| Sbjct 403495 CTGCTCCTCCTTGCCAGTG-TTCTTCTTCAGCTCTAGGAAGTCAAACACGTCAAAATGCC 403437 Query 26040 ATGGTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATC 26099 | || || || || || || || || |||||| ||||||||||| ||||| | Sbjct 403436 AAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTGTTGCCACCTTGATCGACGTAGC 403377 Query 26100 TTGCAGTTTCATTGAAAACTTTCAACATTGGAAC 26133 || || | ||| ||||| ||| ||| ||||| Sbjct 403376 GAGCGGTGTTGTTGTAAACTCTCAGCATGGGAAC 403343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252948145293875