Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq345 163 3e-35 seq33 86.0 7e-12 seq38 84.2 3e-11 >seq345 Length=614307 Score = 163 bits (180), Expect = 3e-35 Identities = 961/1512 (64%), Gaps = 82/1512 (5%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||| |||| | | || ||||||||| ||||| || | | Sbjct 403024 CCCGCAGCACATGCTCATGAGGGTGTCTGTTGGGATCCACGGGACCGACATCGAAGCGGC 403083 Query 75271 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | | ||||| ||| | | |||| | | || ||||| |||||| | || || |||| Sbjct 403084 CATCGAGACGTACAATCTGCTGTCAGAGAAGTG-GTTCACTCACGCCTCTCCGACTCTCT 403142 Query 75330 TCAATGCTGGTACACCAA--GACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 75387 |||| || || || ||| | |||||| ||||||| |||||| | |||||| || || Sbjct 403143 TCAACGCAGGAAC--CAATCGGCCGCAGCTGTCCAGCTGCTTCTTGCTCGCCATGAAAGA 403200 Query 75388 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 75447 ||| ||| | || ||||| | || || | | |||| || | || || |||| || Sbjct 403201 CGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAGTCTGC 403260 Query 75448 TGGGGGTATTGGGATG-----CACATCCAT--GATG---TGAGAGCCAATAAATCTCGTA 75497 || || ||||| | || | ||| ||| || |||| || ||| | Sbjct 403261 CGGAGGCATTGGCGTAGCGGTCAGCTGCATCAGATCCACTGGGAGC---TACATCGCC-- 403315 Query 75498 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 75557 || || || || | || | || | |||| ||||| | || | ||| || Sbjct 403316 -----GGTACCAACGGGAACTCCAACGGGCTGGTTCCCATGCTGAGAGTTTACAACAACA 403370 Query 75558 CAGCGCGCTATGTAAATCAAGCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTG 75613 | || ||||| || |||||| | ||| | ||| ||| || |||| | |||||| Sbjct 403371 CCGCTCGCTACGTCGATCAAG-GTGGCAACAAAAGACCCGGGGCCTTCGCCATGTACTTG 403429 Query 75614 GAACCATGGCATGCCGATATCATGGAGTTCCTTGAGTT-----ACGACTCAACCAAGGTG 75668 || || |||||| || | | || ||||| ||| | | || | ||||| | Sbjct 403430 GAGCCTTGGCATTTTGACGTGTTTGACTTCCTAGAGCTGAAGAAGAACACTGGCAAGGAG 403489 Query 75669 ACGAAGAGGCTCGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGA 75728 | |||| | ||||| || || | |||||||||| || ||||| ||||||| Sbjct 403490 GAGCAGAGAGCC-----AGAGACCTTTTCTATGCCCTGTGGATCCCCGACCTGTTCATGA 403544 Query 75729 AGCGGGTTGAGG--AGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCT 75786 |||| || ||| | || | |||||||| | ||||| || || || || || Sbjct 403545 AGCGAGTGGAGAGCAACCAGGAC--TGGTCTCTGATGTGTCCCAACGAGTGTCCGGGGCT 403602 Query 75787 CTCCGAC-GCGGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTA 75845 | ||| || | ||| ||||||||||| || ||||| | || || |||| || | Sbjct 403603 CGACGAGTGCTGGGGG-GAGGAGTTTGAGAAGCTGTACACTACATACGAGAAGGAAGGGA 403661 Query 75846 GAGCCAATGCGACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACG 75904 | | || ||| || | | | | | ||||| | || || | | || |||||| Sbjct 403662 GGGTGAA-GCGTGTGGTGAAAGCTCAGCAGCTTTGGTACGCCATCATAGAGTCCCAGACG 403720 Query 75905 GAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAG 75964 ||||| ||||| || || ||| | ||||| || || || |||| |||||| ||||| || Sbjct 403721 GAGACCGGAACGCCGTACATGTTGTACAAAGACGCGTGCAACAGGAAGAGCAACCAGCAG 403780 Query 75965 AATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAG 76024 ||| |||| || |||||| || || | |||||||| | | || ||||| Sbjct 403781 AATCTGGGCACCATCAAGTGCAGCAACTTGTGCACGGAGGTCGTGGAATACACCAGCGCC 403840 Query 76025 GATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAG 76084 || ||| ||| ||||||||| ||||||| ||||| || | ||| |||| ||| Sbjct 403841 GACGAGGTGGCAGTTTGCAATCTGGCATCCATCGCTCTCAACATGTACGTCACGCCTGAG 403900 Query 76085 ACTCGCACTTTTGATTATGAAAAACT-TCA--TGAAATCACAAAGATTGTTACCAAAAAT 76141 ||||||| ||| | | ||||||| || || | || | ||| || |||||| Sbjct 403901 ---CGCACTTATGACTTTAAAAAACTGGCATCTGTGACCAAAGTGATAGT---CAAAAAC 403954 Query 76142 CTAAACCGAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAAT 76198 | ||| ||||||| | || | || || || ||| | | | | ||| || Sbjct 403955 TTGAACAAGATCATTGAAATCAACTACTACCCGGTCCCCGAGGCCGAG---ATGTCCAAC 404011 Query 76199 ATGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGC 76258 | || ||||| || || || | || || || ||| | || || | || || ||| Sbjct 404012 AAACGCCACAGGCCGATCGGAATCGGAGTCCAGGGTTTAGCAGACGCCTTCATCTTGATG 404071 Query 76259 CGCTACGCATTTG--ATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCA 76316 || ||| | |||| | || | || || || | | || | || ||||| |||| Sbjct 404072 CGTTACCCCTTTGAAAGTCCG--GAGGCTCAGCTGCTCAACATCCAGATGTTTGAGACCA 404129 Query 76317 TGTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAA---GGTTCCTATG 76373 | || |||| | |||||||| || || || | || ||| || || |||| | Sbjct 404130 TCTACTACGCCGCTCTGGAGGCCAGCTGCGAGCTCGC---GGCCAAACTGGGCCCCTACG 404186 Query 76374 AGACATTTGAGGGTTCTCCCGCGTCCCAAGGGG--TGCTTCAGTTTGATATGTGGGAAGG 76431 |||| | || || ||| | |||| ||||| | || |||| || ||||||| | Sbjct 404187 AGACGTACGAAGG--CTCGCCCGTCAGCAGGGGCATCCTGCAGTACGACATGTGGG-ACA 404243 Query 76432 TGAAACCAAGCTCAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGT 76489 || || | || | | | |||||| | | || ||||| ||| || | || Sbjct 404244 AGACGCCGA-CTGACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCAAGCACGGC 404302 Query 76490 CTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGT 76549 | | ||||| || || |||| || ||||| || || |||||||| || ||| |||| Sbjct 404303 GTGAGAAACAGCCTGCTGCTGGCGCCGATGCCCACGGCGTCCACCGCCCAGATCCTGGGC 404362 Query 76550 AATAATGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGT 76609 || || || | | | || | ||||| | ||||||||| | || |||| | || Sbjct 404363 AACAACGAGTCCATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGA 404422 Query 76610 GAGTTTGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCC 76669 ||||| || |||||| || || |||| ||||| | | ||| || || ||| | Sbjct 404423 GAGTTCCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACGGAGAGGGGGCTGTGGAAC 404482 Query 76670 AAGGATATGAAG 76681 |||| |||||| Sbjct 404483 GAGGAGATGAAG 404494 >seq33 Length=3077319 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 65077 GAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGC-GC 65135 ||||| ||| | || ||||| |||||||| ||||||||||| || || || ||| || Sbjct 3038972 GAGCGACTTGTGGCTTTTGCAGCCGTGGAGGGCATCTTCTTCTCAGGCTCCTT-TGCTGC 3039030 Query 65136 TATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTAT 65195 || |||||| | |||||| | || |||||||| ||||| || ||| |||||||| || Sbjct 3039031 CATCTATTGGCTAAAGAAGAGAGGCCTCATGCCTGGCCTGACCTACTCCAATGAACTGAT 3039090 Query 65196 TTCCCGAGATGAGG 65209 | | ||||||| Sbjct 3039091 CAGCAGGGATGAGG 3039104 >seq38 Length=2821725 Score = 84.2 bits (92), Expect = 3e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 75878 TGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGAT 75937 ||| | || || || | || ||||| || || || || || || ||||| |||||||| Sbjct 1026471 TGGTACGCCATCATCGAGTCGCAGACAGAAACYGGGACGCCTTACATGCTCTACAAGGAC 1026530 Query 75938 GCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGC 75997 || || |||| |||||| ||||| | || |||| || ||||| | || || ||| Sbjct 1026531 GCCTGCAACAGGAAGAGCAACCAGCAAAACCTGGGCACCATCAAATCCAGCAACCTGTGC 1026590 Query 75998 ACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 ||||| || ||||||||||| | | |||||| Sbjct 1026591 ACGGAGATCGTAGAGTACACAAGTGATGATGAG 1026623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596347489680800