Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq340 158 1e-32 seq212 156 5e-32 seq408 149 8e-30 seq344 140 4e-27 seq110 134 2e-25 seq11 122 1e-21 seq345 114 2e-19 seq38 100 3e-15 seq224 95.1 1e-13 seq17 95.1 1e-13 seq558 89.7 6e-12 seq33 89.7 6e-12 >seq340 Length=642261 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 186900 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 186959 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| ||||| ||| |||||||| | ||||||| |||| | Sbjct 186960 TGGTGGACCTCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCGGAGGCGATGCGCTCGAAGA 187019 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| ||| |||| Sbjct 187020 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCGGTGTCAGGGT 187079 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 187080 GGACCTGCTTCAGCACCTTGTA 187101 >seq212 Length=975815 Score = 156 bits (172), Expect = 5e-32 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 173309 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 173250 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| ||||| ||| ||||||| | ||||||| |||| | Sbjct 173249 TGGTGGACCTCTTGTTGTAGTGAGCCAGGCGGGACGCCTCGGAGGCGATGCGCTCGAAGA 173190 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | ||||| || ||||||||||||| ||| | |||| ||||||||| |||||||| Sbjct 173189 TYTCGTTYACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGGTGTCGGGGT 173130 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 173129 GGACCTGCTTCAGCACCTTGTAGA 173106 >seq408 Length=440226 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| ||| | ||||||||||||||||||||||| | | | || Sbjct 7455 GCTTGGCCAACTCTCCGGGCAGCAGGAGGCGCACGGCGGTCTGGATCTCCCTGGAGGTGA 7514 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| ||||| ||| |||||||| | ||||||| |||| | Sbjct 7515 TGGTGGACCTCTTGTTGTAGTGAGCCAGGCGGGAGGCCTCGGAGGCGATGCGCTCGAAGA 7574 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| ||| |||| Sbjct 7575 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGACGAGATGCCGGTGTCAGGGT 7634 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||| ||||| Sbjct 7635 GAACCTGCTTCAGCACTTTGTA 7656 >seq344 Length=691188 Score = 140 bits (154), Expect = 4e-27 Identities = 152/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | |||||| || |||||||||||||| | | || Sbjct 205937 GCTTGGCCAGCTCTCCGGGTAGCAGCAGGCGGACCGCGGTCTGGATCTCCCTGGACGTGA 205878 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| ||||| ||| ||||||| ||||||| |||| | Sbjct 205877 TGGTGGACCTCTTGTTATAGTGGGCCAGGCGGGACGCCTCGGACGCGATGCGCTCGAAGA 205818 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||| || ||| |||| Sbjct 205817 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAGGAGATACCGGTGTCCGGGT 205758 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 205757 GCACCTGCTTCAGCACCTTGTA 205736 >seq110 Length=1683906 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | ||||||||||||||||| ||||| | | | || Sbjct 449419 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACGGCGGTCTGAATCTCCCTGGAGGTGA 449360 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| ||||| ||| ||||| | | ||||||| |||| | Sbjct 449359 TGGTGGACCTCTTGTTGTAGTGAGCCAGGCGGGACGCCTCAGAGGCGATGCGCTCGAAGA 449300 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| ||||| || || |||| Sbjct 449299 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAAGAGATACCGGTATCCGGGT 449240 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 449239 GGACCTGCTTCAGCACCTTGTA 449218 >seq11 Length=5004986 Score = 122 bits (134), Expect = 1e-21 Identities = 148/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||| | |||||||||||| | | | || Sbjct 4322191 GCTTGGCCAGCTCACCGGGCAGCAGGAGGCGCACTGTGGTCTGGATCTCCCTGGAGGTGA 4322132 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| | |||||| |||| ||||| ||| |||| | | ||||||| |||| | Sbjct 4322131 TGGTGGACCTCTTGTTGTAGTGAGCCAGGCGGGAAGCCTTCGAGGCGATGCGCTCGAAAA 4322072 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| |||||| || |||||||||| || | |||| ||||||| |||||||| Sbjct 4322071 TGTTGTTGACGAATGAGTTCATGAAGCTCACGGCCTTGGAGGAGATGGTGGTGTCGGGGT 4322012 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 4322011 GGACCTGCTTCAGCACCTTGTA 4321990 >seq345 Length=614307 Score = 114 bits (126), Expect = 2e-19 Identities = 147/202 (73%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 || ||||||||||| || |||| ||| | || | |||||||| || || |||||||| Sbjct 403389 TGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGTTGGAG 403330 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGGCAAA 1630181 | |||||||| || || | |||| || | || | ||| || | || | Sbjct 403329 TTCCCGTTGGTACCGGCGATGTAGCTCCCAGTGGATCTGATGCAGCTGA----CCGCTAC 403274 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 ||| ||||| ||||| |||||||| ||||| |||||||| || || |||||||||||||| Sbjct 403273 GCCAATGCCTCCGGCAGACTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCC 403214 Query 1630242 CTCGATCGAGTCGGCCTTCATG 1630263 ||||| |||| | |||||| Sbjct 403213 TTCGATGCTGTCGTCTTTCATG 403192 Score = 102 bits (112), Expect = 1e-15 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 ||||||| || | | || ||||| |||| ||| || ||||||| | || || | Sbjct 404480 TCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTC 404421 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 | ||||| || | ||| |||||||||||| ||||| ||||| | |||| |||||| Sbjct 404420 CGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGC 404361 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 |||||||||| | || | ||||||||||| |||||| || || ||| | || || Sbjct 404360 CCAGGATCTGGGCGGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGC 404301 Query 1627475 CGTGCT 1627480 |||||| Sbjct 404300 CGTGCT 404295 >seq38 Length=2821725 Score = 100 bits (110), Expect = 3e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 |||||||| |||||||||||| || | | || |||||||| ||||||||| | || Sbjct 1026601 ACGATCTCCGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTTTGCTGGTTGCTCTTC 1026542 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 |||| ||||||||||| ||||||||| |||| || || || |||||| | ||| | Sbjct 1026541 CTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTCCCRGTTTCTGTCTGCGACTCGATG 1026482 Query 1628287 ATGGCCGACCAGATCTG 1628303 ||||| |||| | ||| Sbjct 1026481 ATGGCGTACCACAGCTG 1026465 Score = 89.7 bits (98), Expect = 6e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 1627348 AAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCG 1627407 || || || |||||||| | ||| |||||||||||| | ||| ||||| || |||| Sbjct 1027528 AACTCTCCTGAGAGCACCCTGCGAGTGTAGATGTTGCTCGTGTACGCCTCGATCGACTCG 1027469 Query 1627408 GTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTG 1627467 |||||||||||||||| | ||| | |||||||||||| | |||| || || ||| Sbjct 1027468 TTGTTGCCCAGGATCTGAGCCGTGGAGGCCGTGGGCATCGGGGCCAACAGCAGGCTGTTC 1027409 Query 1627468 CGCAGGCCGTGC 1627479 | || |||||| Sbjct 1027408 CTCACACCGTGC 1027397 >seq224 Length=919225 Score = 95.1 bits (104), Expect = 1e-13 Identities = 90/113 (80%), Gaps = 4/113 (4%) Strand=Plus/Plus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 |||||||||||| |||||| ||||||||||| |||| ||| | || ||| |||||| Sbjct 224884 CGTCATCTCCTTCGACGGCTCCTACGTCAACTACCGTCACCTGGCTCTGCTTTGCGACAC 224943 Query 512110 CATGTGCTGCCGCGG--ATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCG 512160 |||| ||||||||| ||| || ||||| |||| || |||||| ||||||| Sbjct 224944 CATGACCTGCCGCGGTCATC--TGATGGCCATCACCCGTCACGGCATCAACCG 224994 >seq17 Length=4241957 Score = 95.1 bits (104), Expect = 1e-13 Identities = 144/202 (71%), Gaps = 5/202 (2%) Strand=Plus/Minus Query 1254348 GCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCGTG 1254407 ||||| || ||| ||| | |||| | |||| |||||| ||||| | | | ||| ||| Sbjct 1783149 GCCAGCTCTCCGGGCAGCAGCAGGTGGACGGGGGTCTGAATCTCCCTGGAGGTGATGGTG 1783090 Query 1254408 TTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCG 1254467 | |||||| |||| ||||| ||| ||||||| | |||||| | || |||||| Sbjct 1783089 GACCTCTTGTTGTAGTGAGCCAGGCGGGAAGCCTCGGAGGCGATGCACTTGAAGATGTCG 1783030 Query 1254468 TTGACAAACGAGTTCATGACCGACATCGACTT-GTTGGAGATGCCCACGTC-GGGGT--- 1254522 ||| | |||||||||||| | | | ||| | ||||||||| ||| ||||| Sbjct 1783029 TTGGCGGACGAGTTCATGATGCTCTTGGCCTTGGGAGGAGATGCCGGTGTCAGGGGTGGG 1782970 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | ||||||| ||||||||||| Sbjct 1782969 GGACCTGCTCCAGCACCTTGTA 1782948 >seq558 Length=349536 Score = 89.7 bits (98), Expect = 6e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 869830 CACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTG 869889 ||||||||| || ||||||| |||||||||||||| |||||||||| ||| | | || Sbjct 127147 CACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTGCCAGATGTCGTG 127206 Query 869890 GTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 ||| |||| ||||||| ||| ||||| |||||||| Sbjct 127207 GTACTGGATGGGGAAGATGACGAAGCGACGAGGGTTGTC 127245 >seq33 Length=3077319 Score = 89.7 bits (98), Expect = 6e-12 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 869192 CTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAG 869251 ||||||| ||| ||| ||| ||||| ||||||||||| | |||||| |||||| || Sbjct 3039093 CTGATCAGTTCATTGGAGTAGGTCAGGCCAGGCATGAGGCCTCTCTTCTTTAGCCAATAG 3039034 Query 869252 ATGGC-GCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||| ||| || ||| ||||| ||||||||||| ||||| ||||| Sbjct 3039033 ATGGCAGCA-AAGGAGCCTGAGAAGAAGATGCCCTCCACGGCTGCAAA 3038987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104694903416845