Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq345 197 1e-45 seq7633 125 6e-24 seq68 109 5e-19 >seq345 Length=614307 Score = 197 bits (218), Expect = 1e-45 Identities = 990/1550 (64%), Gaps = 53/1550 (3%) Strand=Plus/Minus Query 138479 TCAAGTCGTTTATCAGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAA 138538 ||| ||| || | ||||| ||| | || ||| || || |||| | || | || Sbjct 404462 TCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGGG 404403 Query 138539 CGTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGG 138598 ||| |||||| ||||| | | ||| | || |||||||| ||||| ||||| || |||| Sbjct 404402 TGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 404343 Query 138599 TCGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGAT--TCG 138656 ||| || ||||| ||||| || || || | | ||||| |||| || Sbjct 404342 ACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCCGTG---CTTGGCGATCT 404286 Query 138657 T-TCCTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACT 138715 | ||||| ||| | ||||||||||| || | || | |||| |||||| ||||||| Sbjct 404285 TCTCCTTCAGCAGCTTCCAGTCCCACAGGTCAGTCGGCGTCTTGTCCCACATGTCGTACT 404226 Query 138716 GTAACATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCG 138775 | | || ||| || |||| ||||||||||| ||||| || | | || Sbjct 404225 GCAGGATGCCCCTGCTGACGGGCGAGCCTTCGTACGTCTCGTAGGGGCCCAGTTTGGCCG 404166 Query 138776 CCAACTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGA 138835 | | |||| ||| ||||| || || | ||||| || || || ||||| |||| Sbjct 404165 CGAGCTCGCAGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGA 404106 Query 138836 GCAATCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCC 138895 ||| | ||||| | || || | || || | || |||| ||||| || | | Sbjct 404105 GCAGCTGAGCCTCCGGACTTTCAAAGGGGTAACGCATCAAGATGAAGGCGTCTGCTAAAC 404046 Query 138896 CTTGCACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---A 138952 | || || || | ||||| || | ||||| || ||| | |||| ||| | Sbjct 404045 CCTGGACTCCGATTCCGATCGGCCTGTGGCGTTTGTTGGACATCT---CGGCCTCGGGGA 403989 Query 138953 TAGGATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTA- 139011 || || ||||| | || ||||| ||||| || ||| || | ||| || ||| | Sbjct 403988 CCGGGTAGTAGTTGATTTCAATGATCTTGTTCAAGTTTTTGACTATCACTTTGGTCACAG 403929 Query 139012 -TGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTT 139070 ||| | | || ||| || || |||| | | | ||| ||||| ||| | Sbjct 403928 ATGCC--AGTTTTTTAAAGTCATAAGTGCGCTCA--GGCGT----GACGT--ACA----T 403883 Query 139071 GTTGACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGAC 139130 ||||| | || || || | ||||| || ||||| ||||||| | | ||||||| || Sbjct 403882 GTTGAGAGCGATGGATGCCAGATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCAC 403823 Query 139131 AATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCG 139190 | || | ||||| || || |||||||| || || | ||| || || ||||| || | Sbjct 403822 GACCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCT 403763 Query 139191 GTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAAT 139250 ||| || || |||||||| | ||| ||||| || || || ||| || | |||||| || Sbjct 403762 GTTGCACGCGTCTTTGTACAACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGAT 403703 Query 139251 GAATTTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCG--TCGCGCTCGTAC 139308 | | | | | | ||||| | |||| | | || || |||||| Sbjct 403702 GGCGTACCAAAGCTGCTGAGCTTTCACCACACGCT--TCACCCTCCCTTCCTTCTCGTAT 403645 Query 139309 TTTTCGTAGAGTTCGTCGAA-TCGTTCACC--GTAGGCGTCAGAAAGATCGCGACACTTG 139365 | ||| || | || || || | | || | | |||| || | |||||| | Sbjct 403644 GTAGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCG---AGCCCCGGACACTCG 403588 Query 139366 TCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGA 139425 | |||||||| || ||||| | ||| || || ||| |||||||||| || || Sbjct 403587 TTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGG 403528 Query 139426 ATCCACAAAGCGAACAGCAAA--TCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTT 139483 ||||||| || | || ||| || | || ||| || ||| || |||| | Sbjct 403527 ATCCACAGGGC--ATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCAGTGTTCTTCT 403470 Query 139484 TCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGC 139543 ||| | ||||| ||||| |||||| ||||| || |||| || ||||| | || | Sbjct 403469 TCAGCTCTAGGAAGTCAAACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCC 403410 Query 139544 CTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACA 139600 | | |||| |||||||||||||||| || | | || ||| | || | || || Sbjct 403409 CGGGTCTTTTGTTGCCACCTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCA 403350 Query 139601 TCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGCTCGGA 139660 | || |||| ||| | | | |||||||| | |||| || | || || Sbjct 403349 TGGGAACCAGCCCGTTGGAGTTCCCGTTGGTACCGGCGATGTAGCTCCCAGTGGATCTGA 403290 Query 139661 CGTCATGT-ACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT 139719 | || | || | ||| || || ||| || | ||||| || | |||| | || | Sbjct 403289 TG-CAGCTGACCGCTACGCCAATGCCTCCGGCAGACTTGGAAATGAGGGCGCACT-GCTT 403232 Query 139720 AATG-TCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGA 139778 | | | ||||| || ||| ||||||||||| | ||| | || || ||||| || Sbjct 403231 CAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGA 403172 Query 139779 AAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA-CATTT 139837 || ||||| | || || || || || ||||| ||| ||||| ||||| || || Sbjct 403171 CAGCTGCGGCCGATTGGTTCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAACCACTT 403112 Query 139838 GTTTCGACATCAATTCGTACGTTTCGATGG-CGCTCACAATATCCCTTCCGTGGATACCG 139896 | | |||| || | |||||| ||||||| |||| | || || | |||||||| || Sbjct 403111 CTCT-GACAGCAGATTGTACGTCTCGATGGCCGCT-TCGATGTCGGTCCCGTGGATCCCA 403054 Query 139897 ACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttC 139956 ||||| || | ||| ||||| || || || ||||||||| ||| | |||||| | Sbjct 403053 ACAGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGATTTTCAGC 402994 Query 139957 AGATAACCGTTCTCTAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||||| | ||| || |||||| | || ||| | | ||| |||||| Sbjct 402993 AGATAGGAGCGCTCCAGAGTCTTGAATCCGAAGAAGTTGTAGGAGAAATC 402944 >seq7633 Length=1847 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24705 TGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCG 24764 |||||||||| | || || || || ||||| || || ||||| || || || || | Sbjct 1556 TGCAGATCTTCGTGAAGACCCTCACTGGTAAGACCATCACGCTGGAGGTGGAGCCCGATG 1615 Query 24765 ACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAAC 24824 ||| |||| || || ||| |||||||| ||||||||||| || ||||| || || | Sbjct 1616 ACAACATAGAGACAGTGAAAGCTAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGC 1675 Query 24825 AACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACA 24884 | | |||| ||||| |||||||||||||| ||| | | | |||| || || ||| Sbjct 1676 AGAGGCTGATTTTTGCTGGGAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTACGACA 1735 Query 24885 TTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 | || |||||||| || || ||| |||| |||| ||| | || ||| Sbjct 1736 TCCAGAAGGAATCAACCCTCCACCTGGTCCTGCGTTTGAGGGGCGGC 1782 Score = 109 bits (120), Expect = 5e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||||||||| || ||||| || || || | |||| ||||| |||||| Sbjct 1411 AAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTGATTTTTGCTGGGAAA 1470 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 |||||||| ||| | | | ||||||| || ||||| || |||||||| || || ||| Sbjct 1471 CAGCTGGAAGATAGCCGGACCCTGTCAGACTACAACATCCAGAAGGAATCAACCCTCCAC 1530 Query 24908 TTGGTGTTGCGATTGCGCGGAGGCG 24932 |||| |||| ||| | || |||| Sbjct 1531 CTGGTCCTGCGTTTGAGGGGTGGCG 1555 >seq68 Length=2311667 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || ||||| || || ||| | || || || | Sbjct 1552369 ATGCAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACGGTGGAGGTGGAGCACGGT 1552428 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| |||| || || || |||||||| || |||||||| || ||||| || || Sbjct 1552429 GACACCATAGAGACCGTGAAGGCTAAGATCCAGGAAAAAGAAGGCATCCCTCCTGACCAG 1552488 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| ||||| || ||||||||||| ||| | | | |||| || || ||| Sbjct 1552489 CAGAGACTGATTTTTGCTGGCAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTACAAC 1552548 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || | |||||||| || || ||| |||| |||| Sbjct 1552549 ATCGATAAGGAATCAACCCTGCACCTGGTCCTGCG 1552583 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| |||||||| | || || || || ||||| || || ||| | || || || | Sbjct 1552596 ATGAAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACGGTGGAGGTGGAGCACGGT 1552655 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||| || || || |||||||| || |||||||| || ||||| || || Sbjct 1552656 GATACCATAGAGACCGTGAAGGCTAAGATCCAGGAAAAAGAAGGCATCCCTCCTGACCAG 1552715 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||| ||||| || ||||||||||| ||| | | | |||| || || ||| Sbjct 1552716 CAGAGACTGATTTTTGCTGGCAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTACAAC 1552775 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || | |||||||| | || ||| |||| |||| || | || ||| Sbjct 1552776 ATCGATAAGGAATCACCCCTGCACCTGGTCCTGCGTCTGAGAGGTGGC 1552823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449730097499800