Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq226 159 2e-34 seq7633 114 8e-21 seq68 109 4e-19 seq1233 100 2e-16 seq2815 98.7 6e-16 seq1430 96.9 2e-15 seq1462 91.5 1e-13 seq18886 89.7 3e-13 seq244 84.2 1e-11 >seq226 Length=808630 Score = 159 bits (176), Expect = 2e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||||||||| | ||| ||||||||| ||||| ||||| || Sbjct 361803 CCACCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 361744 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| |||||||||||||| | |||||||| | || Sbjct 361743 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 361684 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || ||||| | | || | ||| ||| ||| || Sbjct 361683 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 361624 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| || ||||||||||| ||||| ||||||||| Sbjct 361623 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 361576 >seq7633 Length=1847 Score = 114 bits (126), Expect = 8e-21 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || |||||||| | |||||||||||| | ||| |||||||| |||| ||||| || Sbjct 1781 CCGCCCCTCAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGAC 1722 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || ||| ||||| || || || || || ||||| | |||||||| | || Sbjct 1721 AGGGTCCGGCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1662 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || ||| || | |||| |||| || ||| || Sbjct 1661 ATGCCTTCTTTGTCCTGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCACC 1602 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCA 34976 || | || |||||||| || ||||||||||| || |||||||||| Sbjct 1601 TCCAGCGTGATGGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 >seq68 Length=2311667 Score = 109 bits (120), Expect = 4e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 34756 CCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCT 34815 ||||| | |||||||||||| | ||| ||||| | ||||| ||||| || ||| | Sbjct 1552590 CCTCAGACGCAGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGACAGGGT 1552531 Query 34816 GCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCC 34875 || ||| ||||| || || || || || ||||||| |||||||| | || | || Sbjct 1552530 CCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCC 1552471 Query 34876 CTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAAC 34935 || || || | || || || |||| |||| | ||| | ||| || || || Sbjct 1552470 TTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCCACCTCCAC 1552411 Query 34936 GGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || |||||||| || ||||||||||| ||||||||||||||| Sbjct 1552410 CGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATG 1552368 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGG-TGCTCTCCTTCTGAATGTTATAGTCCGA 34809 || || |||| | |||||||||||| | || || | ||||| | ||||| ||||| || Sbjct 1552822 CCACCTCTCAGACGCAGGACCAGGTGCAGGGGTGAT-TCCTTATCGATGTTGTAGTCGGA 1552764 Query 34810 TAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGG 34869 ||| | || ||| ||||| || || || || || ||||||| |||||||| | || Sbjct 1552763 CAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGG 1552704 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | || || || || | || || || |||| |||| | ||| | ||| || Sbjct 1552703 GATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTATCACCGTGCTCCAC 1552644 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || || |||||||| || ||||||||||| |||||||||| |||| Sbjct 1552643 CTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTTCATG 1552595 >seq1233 Length=91233 Score = 100 bits (110), Expect = 2e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 34755 CCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGC 34814 |||||| | |||||||||||||| ||| | ||||||| ||||| ||||| || ||| Sbjct 81230 CCCTCAGACGCAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAGTCGGACAGGG 81289 Query 34815 TGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCC 34874 |||| |||| || || ||||| | |||||||||||| | |||||||| | || | | Sbjct 81290 TGCGGCCATCTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGC 81349 Query 34875 CCTCCTTGTC 34884 | |||||||| Sbjct 81350 CTTCCTTGTC 81359 >seq2815 Length=13304 Score = 98.7 bits (108), Expect = 6e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||||||||||| ||| | ||||||| ||||| || || || Sbjct 3022 CCACCCCTCAGACGCAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGAC 2963 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| || || ||||| | |||||||||||| | |||||||| | || Sbjct 2962 AGGGTGCGGCCATCTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 2903 Query 34871 ACCCCCTCCTTGTC 34884 | || |||||||| Sbjct 2902 ATTCCTTCCTTGTC 2889 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||||| ||| | ||||||| ||||| || || || ||| |||| |||| Sbjct 330 CAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATC 271 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || ||||| | |||||||||||| | |||||||| | || | || |||||||| Sbjct 270 TTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTC 211 >seq1430 Length=76859 Score = 96.9 bits (106), Expect = 2e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||||||||||| ||| | ||||||| ||||| ||||| || Sbjct 25234 CCACCCCTCAGACGCAGGACCAGGTGAAAGGTTGACACCTTCTGGATGTTGTAGTCGGAC 25293 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 ||| |||| |||| || || ||||| | |||||||||||| | |||||||| Sbjct 25294 AGGGTGCGGCCATCTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTC 25346 >seq1462 Length=72336 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | |||||||||||||| | | | ||||||| ||||| ||||| || Sbjct 21810 CCACCCCTCAGACGCAGGACCAGGTGAAGGRTTGACACCTTCTGGATGTTGTAGTCGGAC 21869 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| || | |||| || || ||||| | |||||||||||| | |||||||| | || Sbjct 21870 AGGGTGTGGCCATCTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAAGAGGG 21929 Query 34871 ACCCCCTCCTTGTC 34884 | | |||||||| Sbjct 21930 ATGACTTCCTTGTC 21943 >seq18886 Length=299 Score = 89.7 bits (98), Expect = 3e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||||| ||| | ||||||| ||||| |||| || ||| |||| |||| Sbjct 229 CAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGCAGTCGGACAGGGTGCGGCCATC 170 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || ||||| |||||||||||||| | |||||||| Sbjct 169 TTCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTC 131 >seq244 Length=814671 Score = 84.2 bits (92), Expect = 1e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||||| ||| | ||||||| ||| | ||||| || ||| |||| |||| Sbjct 499799 CAGGACCAGGTGAAGGGTAGACACCTTCTGGATGGTGTAGTCGGACAGGGTGCGGCCATC 499740 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTC 34863 || || ||||| |||| ||||||||| | |||||||| Sbjct 499739 TTCAAGCTGCTTGCCGGTGAAGATCAGCCTCTGCTGGTC 499701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325574571986915