Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7633 102 6e-17 seq68 100 2e-16 >seq7633 Length=1847 Score = 102 bits (112), Expect = 6e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||||||||||||| |||| || || || ||||| || || |||| || || | Sbjct 1781 CCGCCCCTCAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGAC 1722 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || ||||| |||||| | |||| || ||||| || || || Sbjct 1721 AGGGTCCGGCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1662 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || |||||||| || | || ||| || || |||| ||||| | || || Sbjct 1661 ATGCCTTCTTTGTCCTGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCACC 1602 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785 || || || || || || ||||| | ||| || || || ||||||| Sbjct 1601 TCCAGCGTGATGGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || |||||||||||||| |||| || || || ||||| || || ||||| || || | Sbjct 1553 CCACCCCTCAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCTGAC 1494 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || ||||| |||||| | |||| || ||||| || || || Sbjct 1493 AGGGTCCGGCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1434 Query 29680 ATACCCTCTTTGTCTTG 29696 || || |||||||| || Sbjct 1433 ATGCCTTCTTTGTCCTG 1417 >seq68 Length=2311667 Score = 100 bits (110), Expect = 2e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 29565 CCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGT 29624 ||||| |||||| |||| || || || ||||| || | ||||| || || | | ||| Sbjct 1552590 CCTCAGACGCAGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGACAGGGT 1552531 Query 29625 GCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACC 29684 || ||| || || |||||||||||| | |||| ||| ||||| || || || || || Sbjct 1552530 CCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCC 1552471 Query 29685 CTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAG 29744 ||||| || || | || || || || |||| |||||| | || || || | Sbjct 1552470 TTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCCACCTCCAC 1552411 Query 29745 AGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || ||||| | ||| || ||||| |||||||| || Sbjct 1552410 CGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATGTT 1552366 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || |||| |||||| |||| || || | ||||| || | ||||| || || | Sbjct 1552822 CCACCTCTCAGACGCAGGACCAGGTGCAGGGGTGATTCCTTATCGATGTTGTAGTCGGAC 1552763 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || |||||||||||| | |||| ||| ||||| || || || Sbjct 1552762 AGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGG 1552703 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| || || | || || || || |||| || ||| | || || Sbjct 1552702 ATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTATCACCGTGCTCCACC 1552643 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || || ||||| | ||| || ||||| |||| ||| Sbjct 1552642 TCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTTCAT 1552596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385079363624685