Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4 300 1e-75 seq53 107 1e-17 seq1597 100 2e-15 seq92 98.7 7e-15 >seq4 Length=9009805 Score = 300 bits (332), Expect = 1e-75 Identities = 968/1481 (65%), Gaps = 34/1481 (2%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||| | |||||| |||||||| |||||||| | ||||| || || || || Sbjct 6748147 TTTGTCCACGGCCGACACATTTAGAATACCGTTGGCATCAATGTCAAAGGTTACCTCGAT 6748206 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 ||| || || ||||| |||| |||||||| ||| | | ||| | || || ||| Sbjct 6748207 TTGTGGCACACCTCTAGGAGCTGGTGGGATACCTGTGAGCTCAAACCTCCCAAGCAGATT 6748266 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGAT 281594 || ||||| || | || |||||| ||| | | || || |||| || | | || | Sbjct 6748267 GTTGTCTTTGGTCATAGCTCTTTCACCTTCGTACACCTGWATCAGTA-CTCCTGGCTGGT 6748325 Query 281595 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCA 281653 |||| || || || | || | |||| | | | | ||| ||||| ||||| | | Sbjct 6748326 TATCAGAGTACGTGGAGAAGA-TCTGAGTCTGCTTCGAGGGGATTGTGGTGTTCCGTTTG 6748384 Query 281654 ATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 281713 |||| | ||||||| ||||| || ||||| | ||| | ||| || || | ||||| Sbjct 6748385 ATAAGAGGCGTCATAACTCCACCTGCGGTTTCGATACCTAAAGAGAGGGGCGCCACATCC 6748444 Query 281714 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 281773 | || | | || || | || || ||| | || | || ||||| || || | Sbjct 6748445 AGCAGCAGCAAATCCTGGACGTTCTCYGAAGTGTCGCCCATGAGGATAGCAGCCTGGACC 6748504 Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833 ||||||||||| || || ||||||||||| || | ||| || |||| ||||||||| Sbjct 6748505 GCAGCACCATAGGCCACTGCTTCATCAGGGTTGATGCTTTTGTTCAGTTCTTTACCATTA 6748564 Query 281834 AAAAAATT-TGAAAGAAGTTGTCTT-ACCTTAGGAATACGAGATGATCCTCCAACTAATA 281891 || || | || |||| | | ||| | || || || | | || || ||||| | | Sbjct 6748565 AAGAAGTCCTGTAAGA-GYT-TCTGGATTTTGGGTATTCTTGTGGAACCACCAACCAGGA 6748622 Query 281892 CAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT 281951 |||||||||| | || || |||||||| || | ||| | | || ||||| || | Sbjct 6748623 CAATTTCATGGATCTTAGACTTATCCAGCTTGGCATCTTGCAGGGCCTTCTCAACTGGCT 6748682 Query 281952 CAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGA 282011 | || |||| || | || | || || || || || || || || || Sbjct 6748683 CCAGTGTTCCTCTGAAGAGATCYGWGTTGAGCTCCTCAAAACGGGCCCTTGT--GATCGA 6748740 Query 282012 CAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA 282069 | || || || || || || |||| ||| || | ||||| ||| ||||| || Sbjct 6748741 GGTGTAGAAGTCGATACCCTCAAACAGAGAGTCGATCTCAATGTTAGCCTGAGTGCTGGA 6748800 Query 282070 AGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGA 282129 || | | | || || |||||| ||||||| || || | | ||| || | | Sbjct 6748801 GGACAAGGTCCTCTTTGCCTTTTCACAGGCTGTCCGCAGCCTCCTYACTGCTCTT--TTA 6748858 Query 282130 TTGATTCAAATCTGTTTTATAT--TTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 282187 || | | || | |||| | | ||||| || || || |||||| | | || | Sbjct 6748859 TTCTGTGAGATGTCTTTTCTGTGYTTTCTTTTAAACTCCTCAACAAAGTGATTGACCATT 6748918 Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || ||||| || || || || | | || | || || || ||| | |||| || Sbjct 6748919 CGGTTGTCAAAGTCCTCCCCACCAAGGTGTGTGTCCCCAGATGTGGCTTTCACTTCAAAT 6748978 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | |||| |||| | || | | |||||| ||| || || || | |||||| || Sbjct 6748979 ATGCCATTCTCAATGGTCAGGATKGACACATCAAAGGTGCCTCCGCCGAGATCAAAGATG 6749038 Query 282308 AGTACATTCATTTCTTTGTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCA 282364 || || || ||| |||| || |||||| || || || || | || || || Sbjct 6749039 AGCACGTTGCGCTCTCC-TCTT--TTCCCTTTATCCAGGCCGTAAGCRATGGCTGCTGCT 6749095 Query 282365 GTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTG 282424 || ||||| || || || |||| ||| || || |||| || ||| |||||||| ||| Sbjct 6749096 GTGGGTTCGTTGATGATCCTCAGAACGTTCAGTCCAGAGATYACTCCAGCATCTTTGGTG 6749155 Query 282425 GCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC-TTC 282483 ||||| || ||||| ||||| ||||| || || || ||||| || |||| || || ||| Sbjct 6749156 GCTTGCCTCTGTGAGTCGTTGAAATAAGCTGGCACTGTAATGACTGCATTTGACACCTTC 6749215 Query 282484 TTTTCCAATATAAGCGCTT--GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATT 282541 | | ||| || ||| | || | | | |||||||| |||| |||||| ||||| Sbjct 6749216 TGTCCCAG---AAACGCCTCAGCAATCTCTCTCATTTTAACCAAAACCATTGAAGAAATC 6749272 Query 282542 TGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTT---A 282598 | || ||| || | | ||| | ||| || |||| ||| || | || || | Sbjct 6749273 TCCTCAGGACAAAARTCCTTTGTTTCCCCTTTATATTCTACCCGAACTTTAGGCTTCCCA 6749332 Query 282599 TTACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCA 282658 || || | | || ||| ||| ||||| ||| ||||| || || || ||||| Sbjct 6749333 TTGTCAC--TGACTACCTTGAAA-GGCCAGAGTTTTATATCAGACTGGACCACAGGGTCA 6749389 Query 282659 TTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCA 282718 | ||| | ||| ||||| | ||||| |||||||| || || |||| || || | ||| Sbjct 6749390 TCAAACTTTCTCCCAATGAGCCGTTTGGCATCAAAGATTGTGTTGGCGGGGTTCAGGGCA 6749449 Query 282719 GCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGAT 282778 |||| | ||||| ||||||||||| || |||||| ||||| || | || || Sbjct 6749450 ACTTGGTTCTTGGCAGCATCTCCAATGAGCCTTTCTGTGTCTGTGAAGGCGACGTAGCTG 6749509 Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 282838 ||||| || | || |||||||| || || || ||||| || || || | || | ||| Sbjct 6749510 GGAGTCGTCCTGTTGCCTTGATCGTTGGCGATGATTTCCACCTTTCCGTGCTGGAAAACA 6749569 Query 282839 CCTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 || |||||| | || || || | |||||||||||| || Sbjct 6749570 CCAACACAAGAGTAGGTGGTGCCCAGATCAATACCAATGGC 6749610 Score = 143 bits (158), Expect = 2e-28 Identities = 346/516 (67%), Gaps = 6/516 (1%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||| | |||||| |||||||| |||||||| | ||||| || || || || Sbjct 6753700 TTTGTCCACGGCCGACACATTTAGAATACCGTTGGCATCAATGTCAAAGGTTACCTCGAT 6753759 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 ||| || || ||||| |||| |||||||| ||| | | ||| | || || ||| Sbjct 6753760 TTGTGGCACACCTCTAGGAGCTGGTGGGATACCTGTGAGCTCAAACCTCCCAAGCAGATT 6753819 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGAT 281594 || ||||| || | || |||||| ||| | | || || |||| || | | || | Sbjct 6753820 GTTGTCTTTGGTCATAGCTCTTTCACCTTCGTACACCTGAATCAGTA-CTCCTGGCTGGT 6753878 Query 281595 TATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGA-ATTGTTGTGTTTCTATCA 281653 |||| || || || | || | |||| | | | | ||| ||||| ||||| | | Sbjct 6753879 TATCAGAGTACGTGGAGAAGA-TCTGAGTCTGCTTCGAGGGGATTGTGGTGTTCCGTTTG 6753937 Query 281654 ATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 281713 |||| | ||||||| ||||| || ||||| | ||| | ||| || || | ||||| Sbjct 6753938 ATAAGAGGCGTCATAACTCCACCTGCGGTTTCGATACCTAAAGAGAGGGGTGCCACATCC 6753997 Query 281714 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 281773 | || | | || || | || || ||| | || | || ||||| || || | Sbjct 6753998 AGCAGCAGCAAATCCTGGACGTTCTCCGAAGTGTCGCCCATGAGGATAGCAGCCTGGACC 6754057 Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833 ||||||||||| || || ||||||||||| || | ||| || |||| ||||||||| Sbjct 6754058 GCAGCACCATAGGCCACTGCTTCATCAGGGTTGATGCTTTTGTTCAGTTCTTTACCATTA 6754117 Query 281834 AAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892 || || | || |||| || | | || || || | | || || ||||| | || Sbjct 6754118 AAGAAGTCCTGTAAGAGCTTCT-GGATTTTGGGTATTCTTGTGGAACCACCAACCAGGAC 6754176 Query 281893 AATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 281928 ||||||||| | || || |||||||| || | ||| Sbjct 6754177 AATTTCATGGATCTTAGACTTATCCAGCTTGGCATC 6754212 >seq53 Length=2629213 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || || || |||| ||||| || || ||||||||||| || | || ||| Sbjct 110360 TTTTTGTCCAGGCCGTAAGCAATGGCAGCGGCTGTGGGTTCATTAATGATACGCAGCACA 110301 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||| ||| |||| |||||||| |||||||| | || || || || || || Sbjct 110300 TTGAGACCAGAGATTGTTCCAGCATCTTTGGTGGCTTGGCGCTGGGAGTCATTGAAGTAA 110241 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 |||||||| || ||||| |||| Sbjct 110240 GCAGGAACTGTTATAACTGCAT 110219 Score = 91.5 bits (100), Expect = 1e-12 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| || |||||||||||||| | ||||| || || ||||| |||||||| ||||| Sbjct 111534 CACATTGAGGATACCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGGACGCCTCT 111475 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 |||||||||| || || || | |||| | ||||| | ||||| || ||||| | Sbjct 111474 GGGAGCAGGTGGAATACCGGTCAGTTCAAATTTCCCCAGGATGTTATTGTCCTTAGTCAT 111415 Query 281551 TTTTCGTTCACCCTC 281565 || |||||| || Sbjct 111414 GGCTCTTTCACCTTC 111400 >seq1597 Length=45667 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || |||| ||||||||||||||||||||| || |||| | |||||| ||||||| Sbjct 39594 CCGTAGGCAATAGCAGCAGCAGTTGGTTCATTGATGATTCGGAGAACATTGAGACCAGAG 39535 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || |||| |||||||| ||||| || | || || ||||| || || ||||| || || Sbjct 39534 ATGGTTCCAGCATCTTTGGTGGCCTGACGCTGCGAGTCGTTGAAGTAGGCAGGTACTGTG 39475 Query 282464 ATAACGGC 282471 || || || Sbjct 39474 ATTACAGC 39467 >seq92 Length=1742495 Score = 98.7 bits (108), Expect = 7e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| ||||||||||| || || || || || | || |||| Sbjct 390732 TTTTTGTCCAGGCCATAAGCAATGGCAGCAGCAGTGGGCTCGTTGATGATACGCAGAACA 390673 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| |||| | || |||||||| || || || | || || || || || || Sbjct 390672 TTAAGGCCAGAAATTGTCCCGGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTGAAGTAG 390613 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 || |||||||| | || || | |||||| Sbjct 390612 GCGGGAACAGTCACCACAGCGTTTGTTAC 390584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739168082371410