Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq3 95.1 1e-14 >seq3 Length=9842332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 20588 CTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGCCAACGCCTGCTAAAACAGGCCAAA 20647 ||||| || ||||| ||||| || | ||||| ||| | || || | | |||||| Sbjct 1685800 CTGAGCGTGAAGTTCGGGGCCCCCCTGAAAGCCTGCCGGGGTCTTCTTGAGCGGGCCAAG 1685741 Query 20648 AAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCACGTGGGCAGTGGCTGCAAAGATGCA 20707 || | || || || |||||||| |||||||||||||||||||||||||||| || || Sbjct 1685740 GAACTGGGGCTGGATGTGATCGGCGTCAGCTTCCACGTGGGCAGTGGCTGCACTGACGCG 1685681 Query 20708 CAGGCTTACAGAAAAGCCATAGCTGAGGCC 20737 || | ||| |||||||| || || ||| Sbjct 1685680 GAGACCTACGCCAAAGCCATCGCCGACGCC 1685651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463373016178800