Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq226 147 4e-30 seq7633 114 3e-20 seq2815 91.5 3e-13 seq87 86.0 1e-11 seq19 84.2 4e-11 >seq226 Length=808630 Score = 147 bits (162), Expect = 4e-30 Identities = 173/234 (74%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | ||| ||||| || || ||||| || || || || || Sbjct 361803 CCACCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 361744 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || || ||||| || || || || || ||||| Sbjct 361743 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 361684 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || |||||||| || || ||||| || || ||||||||||| || ||| | || || || Sbjct 361683 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 361624 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATA 82817 |||| || || |||||||| || | ||||| ||||| |||||||| ||||| Sbjct 361623 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATGTTTATA 361570 >seq7633 Length=1847 Score = 114 bits (126), Expect = 3e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || ||||||||||| || | ||| || || ||||| ||||| || | || || || Sbjct 1781 CCGCCCCTCAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGAC 1722 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | | ||||| || ||||| |||||||| || || || || || || ||||| Sbjct 1721 AGGGTCCGGCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1662 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || ||||| ||||| || | || || | |||| || || || Sbjct 1661 ATGCCTTCTTTGTCCTGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCACC 1602 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCA 82809 |||| || || ||||| || || | ||||| || || ||||||| Sbjct 1601 TCCAGCGTGATGGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 Score = 95.1 bits (104), Expect = 2e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || ||||||||||| || | ||| || || ||||| ||||| || || || || || Sbjct 1553 CCACCCCTCAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCTGAC 1494 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | | ||||| || ||||| |||||||| || || || || || || ||||| Sbjct 1493 AGGGTCCGGCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGG 1434 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTAC 82735 || ||||| || || || ||||| ||||| || Sbjct 1433 ATGCCTTCTTTGTCCTGGATCTTAGCTTTCAC 1402 >seq2815 Length=13304 Score = 91.5 bits (100), Expect = 3e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | ||| || || || | ||||| || || ||||| || Sbjct 3022 CCACCCCTCAGACGCAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGAC 2963 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || | || ||||| || || || || || ||||| Sbjct 2962 AGGGTGCGGCCATCTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 2903 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 ||||||||||| || || ||||| || || ||||||| | Sbjct 2902 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTMA 2864 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 82597 GCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGT 82656 |||| || | ||| || || || | ||||| || || ||||| || || | | || | Sbjct 331 GCAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCAT 272 Query 82657 CTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTAT 82716 |||| || || || | || ||||| || || || || || ||||| ||||||||||| | Sbjct 271 CTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGT 212 Query 82717 CTTGAATCTTTGCTTTTACATTTTCA 82742 | || ||||| || || ||||||||| Sbjct 211 CCTGGATCTTGGCCTTGACATTTTCA 186 >seq87 Length=1962808 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 ||||||||||| || || ||||| | || | ||| ||||| || ||||||||||| ||| Sbjct 767439 TGGTGGTACTACATCTCCAAAGGAGTGGAGTTCTTGGATACTGTCTTTTTCATACTGAGG 767380 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || ||||| || ||||| || || | || || || || || | ||| ||||| | | Sbjct 767379 AAGAAGTTCAACCAGGTCAGCTTCCTCCATGTCTACCACCACTGTACGATGTTCATCCTG 767320 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||| | ||||| || ||| | |||| || || Sbjct 767319 TGGTGGATCGGCATCAAGTGGGTCCCCGGTGGGCA 767285 >seq19 Length=3792234 Score = 84.2 bits (92), Expect = 4e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 ||| || ||||| | |||||||| | | ||||| || || || || | || ||||| Sbjct 1300569 GATGGCAGGAGCACTGTGGTGGTATTTCGTCTCTAAGGGCATTGAGTATCTGGACACGGT 1300510 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 ||||||||| || |||||||| || || ||||| | || | ||||| || || || | Sbjct 1300509 GTTTTTCATCCTGAGGAAAAAATTCAACCAGGTGACCTTCCTGCACGTCTACCACCACTG 1300450 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 | ||||| || | | ||| | ||||| |||||| | || ||||| || Sbjct 1300449 CAGCATGTTCACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACA 1300399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981452514797115