Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq87 87.8 3e-12 seq19 86.0 1e-11 >seq87 Length=1962808 Score = 87.8 bits (96), Expect = 3e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 ||||||||||| || || ||||| | || | ||| ||||| || ||||||||||| ||| Sbjct 767439 TGGTGGTACTACATCTCCAAAGGAGTGGAGTTCTTGGATACTGTCTTTTTCATACTGAGG 767380 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTT 58497 || ||||| || || || ||||| || || || || || || | ||| ||||| Sbjct 767379 AAGAAGTTCAACCAGGTCAGCTTCCTCCATGTCTACCACCACTGTACGATGTT 767327 >seq19 Length=3792234 Score = 86.0 bits (94), Expect = 1e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 58369 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGT 58428 ||| || ||||| | |||||||| | | ||||| || || || || | || || || Sbjct 1300569 GATGGCAGGAGCACTGTGGTGGTATTTCGTCTCTAAGGGCATTGAGTATCTGGACACGGT 1300510 Query 58429 GTTTTTCATACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTT 58488 ||||||||| || |||||||| || || || || | ||| || ||||| || || || | Sbjct 1300509 GTTTTTCATCCTGAGGAAAAAATTCAACCAGGTGACCTTCCTGCACGTCTACCACCACTG 1300450 Query 58489 TACTATGTTTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 | ||||| || | | ||| | || || |||||| | |||||||| ||| Sbjct 1300449 CAGCATGTTCACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACAG 1300398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903074848717600