Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_024451.1 Length=220222 Score E Sequences producing significant alignments: (Bits) Value seq715 214 3e-50 seq2964 93.3 6e-14 >seq715 Length=171852 Score = 214 bits (236), Expect = 3e-50 Identities = 832/1289 (65%), Gaps = 59/1289 (5%) Strand=Plus/Minus Query 141117 TAATAAATAACATAAAAGATGTCTATTTCAAGTTCAAATGTAACTTCGGGTTTCATCGAT 141176 |||||| ||| || ||| |||||||| || || ||| |||| || || || |||||| Sbjct 53266 TAATAA-TAA-ATTAAACATGTCTATGTCTTCATCTAATATAACCTCAGGGTTTATCGAT 53209 Query 141177 ATCGCCACCAAAGATGAAATTGAAAAATATATGTACGGCGGCAAAACATCCACTGCTTAC 141236 |||||||| || ||||| |||||||||||||| ||| || | |||| || ||| Sbjct 53208 ATCGCCACGTTTGACGAAATCGAAAAATATATGTATGGCAGCCCCCAAGCCACCGCATAC 53149 Query 141237 TTTGTCAGAGAAACCAGAAAATCAACATGGTTCACTCAAGTACCAGTAAGTCTTACAAGA 141296 ||||| ||||||| | | ||||| |||||||| ||||| ||||| ||| | ||| Sbjct 53148 TTTGTAAGAGAAATTCGCATGTCAACCTGGTTCACCCAAGTTCCAGTGCCTCTCTCCAGA 53089 Query 141297 GCAAACGGGTTTCCAAACTTTGGATCAGAATGGTCCGCAAGTGTTTCTCGAGCTGGTGAC 141356 | || | || || ||| ||||||||| | | || || ||||| ||| Sbjct 53088 AATACAGGCAATGCAGCATTCGGACAAGAATGGTCGGTCTCGATCTCGCGCGCTGGCGAC 53029 Query 141357 TATCTTCTTTATACTTGGTTGCGTCTTCGTCTTCCTGCGGTCACTCTCCTCCCAACCAAC 141416 ||| | || | | ||| | || | | | || |||||| || | | ||| Sbjct 53028 TATTTACTGCAGTCGTGGCTACGAGTGCAAATCCCCCAGGTCACGCTTTT----GCAAAC 52973 Query 141417 CAATTCTTTAACGTACCCGTAGCGGGTGCTAACAATGGACGTATTCGTTGGACAAAGAAC 141476 | |||| ||| |||| | |||| ||||| || ||| Sbjct 52972 CGCTTCTCCAAC--------------CGCTA---------CTCTTCGATGGACCAAAAAC 52936 Query 141477 TTTATGCACAACTTGATTAGAGAATGCAGTATCACCTTCAATGATCTAGTTGCAGCGAGG 141536 | ||||||||| ||||| | ||| || ||||| || || || | || ||||| | Sbjct 52935 CTCATGCACAACCTGATTCGCGAAGCCACCATCACGTTTAACGACTTGGTCGCAGCCCGC 52876 Query 141537 TTTGACAATTATCACCTTGATTTCTGGGCAGCATTCACCACCCCTGCATCCAAGGCGGTA 141596 |||||||| || || | || || ||| | || ||||| ||| ||| ||| || | Sbjct 52875 TTTGACAACTACCATTTGGACTTTTGGTCCGCTTTCACGGTCCCAGCAAGCAA-ACGCAA 52817 Query 141597 -GGATATGACAACATGATTGGTAACATTTCGGCTCTTATCCAACCTCAGCCTCCACCA-G 141654 || || || ||||||||||| ||||| || | || || |||| | || |||| | Sbjct 52816 CGGCTACGATAACATGATTGGCAACATCTCATCCCTGAT-TAACCCC--GTTCAACCAGG 52760 Query 141655 TTGCACCTGCGACAGTGTCTCTTCCTGAAATTGATCTGAATCTTCCCTTACCGTTCTTCT 141714 ||||| || | ||||| | || | |||| | || || || ||||| | Sbjct 52759 AGGCACCCTCG---GAGTCTC-TGGTGGCACCACCTTGAACTTGCCATTGCCATTCTTTT 52704 Query 141715 TCTCCAGAGATTCTGGAGTGTCTCTTCCAACTGCAGCTCTTCCCTACAATGAAATGAGAA 141774 |||| ||||| |||||||| || | |||||||| || ||||| |||||||||||| || Sbjct 52703 TCTCGAGAGACACTGGAGTGGCTTTGCCAACTGCTGCCCTTCCATACAATGAAATGCAAA 52644 Query 141775 TCAACTTCCAGTTCAGAGACTGGGATCAGCTCCTAATCCTCGACAACATCAACTCTGCGG 141834 |||| ||| | || ||||| ||| | || |||| || ||| ||||| | | Sbjct 52643 TCAATTTCAACTTTAGAGATTGGACAGAACTTTTAAT-CTTGACCGACCCAACTGTAAGC 52585 Query 141835 CGTCTCAGTCTGTTGTACCTGTA-----GTTGGTGCTGCGGCTGATATCGCTCAGGCTCC 141889 | | || ||| | ||| || || | || | | | || || || || Sbjct 52584 CCAC-CACCGCGTTCTCCCTATATCCCTGTCGTTGTCGGAACACACATTGCCACCGCCCC 52526 Query 141890 TGTCATCTCCCACGCTGC-TGTTTGGGGCAACTACGCAATCGTTTCTAACGAAGAGCGTA 141948 ||| | | || ||| ||||||| ||||||||| ||||| || || |||||| Sbjct 52525 TGTTCT-TGGAACAGTGCAGGTTTGGGCCAACTACGCGATCGTCTCAGGAGACGAGCGTC 52467 Query 141949 GGCGCATGGGTTGTTCAGTAAGAGATATCCTAATTGAACAAGTCCAAACTGCACCACGAC 142008 | || |||||||| || | | || ||||| | || || || ||||| || || ||| Sbjct 52466 GTCGAATGGGTTGCGCAATTCGCGACATCCTCGTCGAGCAGGTGCAAACAGCCCCCAGAC 52407 Query 142009 ATGTGTACAACCCCAACACTAACGACGA-GCCCAGTTATGACATCAGGTTCTCTCATGCC 142067 | ||||||||| ||| ||| ||| ||||| | ||||||| | ||||| || || Sbjct 52406 AAAACTACAACCCCCTCACAAAC-TCGATGCCCACATTTGACATCCGATTCTCCCACGCT 52348 Query 142068 ATTAAGGCTCTGTTCTTTGCAGTTAGAAATACCACATTTAAAAATGTGTGGTCTAACTAT 142127 | || || || || || || || | || | || | ||||| ||||| Sbjct 52347 GTCAAAGCACTCTTTTTCGCCGTGCGCAACAAGACGGGCGCTGCCGAATGGTCCAACTAC 52288 Query 142128 ACAACTGCTAGTCAGGTTGTCAC---CCCTACAACTGTCATATTTGAACCCTCGACAGGA 142184 ||||| || || ||| || ||| ||| ||||| || |||| | | || Sbjct 52287 GCAACTTCTTCTCCAACTGTAACATTCCC--CAA-TGTCAACTTCGAAC---CTGCCGGC 52234 Query 142185 GCATTCGACCCCATTGATCATACCACTCTCATCTACGAAAATACGAACCGTCTTCACCAT 142244 |||| |||||||| | | ||||| || || ||||||||||| |||||||| Sbjct 52233 TCATTTGACCCCATCGCCAACACCACGCTGATTTACGAAAATACAAACCGTCTCGGATCG 52174 Query 142245 ATGGGCAGCGACTACTTCAGTCTTGTGAATCCTTGGTACCATGCACCCACGATTCCGGGA 142304 |||||| ||||||||| | || || || | ||||| || || || || || | Sbjct 52173 ATGGGCTCTGACTACTTCTCGTTGGTCAACCCCTTCTACCACGCCCCTACCATCCCATCA 52114 Query 142305 CTCACCGGTTTCCATGAGTACTCGTACTCCTTGGCGTTCAACGAGATCGACCCCATGGGC 142364 || ||| | ||| |||||||||||| | || |||| ||||||| ||||| Sbjct 52113 TACATCGGCTACCACTTGTACTCGTACTCGCTCCACTTTTACGACCTCGACCCAATGGGA 52054 Query 142365 AGCACCAACTTCGGCAAGCTGACCAACGT 142393 ||||||| ||| ||||| |||||||| Sbjct 52053 TCGACCAACTACGGAAAGCTCACCAACGT 52025 Score = 138 bits (152), Expect = 2e-27 Identities = 281/416 (68%), Gaps = 20/416 (5%) Strand=Plus/Plus Query 91491 GAACTGATTAAGTTTTCGATTGAAGACTGTAAAAGAAGTTTGCC-TCATATCATGGACGG 91549 ||| ||||||| |||||| |||||||||||| ||||||||||| || | || || | || Sbjct 76170 GAAATGATTAAATTTTCGTATGAAGACTGTAAGAGAAGTTTGCCGTCGTGTCTTG-ATGG 76228 Query 91550 TCAAAAAGAATCCCAGAGGAAGGTAATCTTTGGAATAAAACAATGGAATGGGAAAAAAG- 91608 | |||||| || || |||||||| || | | ||| | |||||||| Sbjct 76229 TTTAAAAGAGTCGCAAAGGAAGGTGATTTACGCAATTA------------GGAAAAAATT 76276 Query 91609 --AAGGCTCGGATAGACAAAAAATAAAAGTAGCTCAGCTTGGAGCGTTTGTTGCTCAAAA 91666 || || | | | || | ||||| | |||| | | | || ||| || || | Sbjct 76277 CAAAAGCAC---TTCAAAATTTCTGAAAGTCGTTCAGTTGAGCGGGTATGTCGCCGAACA 76333 Query 91667 GACTGATTACAAACATGGCGAACAAAATCTTTTTGAGACTATAACAAAAATGGCTCAAGA 91726 || || |||||||| || ||||||||| | | || || || | ||| |||| ||| | Sbjct 76334 AACCGACTACAAACACGGAGAACAAAATTTGTGCGAAACCATCATCAAACTGGCACAACA 76393 Query 91727 TTTTGTAGGATCAAACAACATACCTCTTCTTGAACAAGGTGGTCAATTTGGAACTAGGCT 91786 | || ||| |||||||| | || ||| | |||| | ||| |||||||| |||| || Sbjct 76394 ATACGTTGGAACAAACAACCTGCCACTTTTAGAACCCGATGGCCAATTTGGCTCTAGACT 76453 Query 91787 ATCTGGCGGAAAAGATGCAGCCAATCCTAGGTACATTTTCACAAAACAGCCAGAAATTTT 91846 ||||| ||||| ||||| || || | ||||| || || || | | | || |||| Sbjct 76454 GTCTGGTGGAAAGGATGCGGCAAACGAACGATACATATTTACTAAGCCGTCCAAAGTTTT 76513 Query 91847 AAATAAAATCTTCAGGCCTGAAGACGACCCAATTTTAACATACAGCTCTGATAATG 91902 || | || || || |||||||| ||||||||||||| | ||| |||| Sbjct 76514 GAAATATATTTTTAGAGAAGAAGACGATAACATTTTAACATACACCAATGAAAATG 76569 Score = 104 bits (114), Expect = 3e-17 Identities = 145/201 (72%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 76890 AAAACGTACGTACTTGTGGGCAACCATGATTATGAAAATAATCAGCAGTTTCAATCAACA 76949 ||||||| ||||||| || |||||||| ||| ||||||| || || |||| ||||| Sbjct 68657 AAAACGTTTATACTTGTAGGAAACCATGACTATAAAAATAACCAACAATTTCTATCAAAC 68716 Query 76950 AAACATTGGATGAACTCTTTAAAAGAATGGTCTAATGTTATTATAGTTGATA--AAAGT- 77006 || |||||||||||| || | ||| ||||| | ||||| | || ||||||| | ||| Sbjct 68717 AATCATTGGATGAACGCTATGAAACAATGGCCCAATGTAACGATTGTTGATAATATAGTC 68776 Query 77007 -ATAATAAGCAGAGAATATAATATTAATTTGGCATTCGTTCCATATGTTCCTCCAGGAAG 77065 | |||| || | | || | || || ||| ||||| ||||| ||||| ||| | Sbjct 68777 GAATATAAACACTGTAACCAACAATATTT----ATTTGTTCCTTATGTACCTCCTGGACG 68832 Query 77066 GTTTATTGAAGCGCTTGAAAC 77086 ||| |||| || || |||| Sbjct 68833 ATTTGTTGAGGCCATTAAAAC 68853 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 189137 TTTTCTGTGTAT--GGGACTTCAATTAAAGTAACATTATTATCAGCACACATTCTTTTCT 189194 ||||| |||||| || ||||| ||||| |||| || || || ||||| | | | | Sbjct 87576 TTTTCAGTGTATATGGAACTTCTATTAATGTAATGTTGTTGTCTTTGCACATACGTCTTT 87635 Query 189195 TTAGCTCATCTCTATATTGTTGGTTTCTGAACGCCTCATAATTTTTATGG-AAATGGGGG 189253 |||| || ||||| |||| |||||| | | || ||| |||||||||| ||| | | Sbjct 87636 TTAGTTCGTCTCTGTATTTTTGGTTGAGGGAAGCTTCAACATTTTTATGGAAAAATGTCG 87695 Query 189254 ATATATTTATAATGTTGTGCACCGTTGAACTCGACACCCAATTTTAACTTTGGAGAATAA 189313 | | || ||||||| ||| |||||| ||||||| |||| ||||| | || | || Sbjct 87696 AGA-ATGTATAATGCTGTTTTCCGTTGTACTCGACCCCCAGTTTTAGATCTGCGTTAAAA 87754 Query 189314 CAATCGATTTCCAAATTATGCCCTGAGA 189341 || || ||||| ||||| | |||| || Sbjct 87755 CAGTCAATTTCTAAATTGTTACCTGTGA 87782 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 67845 TAGCCATTGAAAATAATGAGGGTTGTGAATAACTCCGCTTTCTTCTCTTCCTGTTCTCCA 67904 || ||| | ||||||||||||||| ||||| | || | | | | | ||| |||| Sbjct 132173 TAACCACTCAAAATAATGAGGGTTATGAATGGCGCCTTTATGTATGCGTGTGGTTTTCCA 132114 Query 67905 GGAGAATGCAGTATGACAGAAGACACAAAACATTTGGTCGCAGCCCTCAATCTTATGAAT 67964 |||||| || ||| || |||||| |||||||||||||| || |||||||| ||||| Sbjct 132113 GGAGAAGGCGACATGGCACTTGACACAGAACATTTGGTCGCACCCATCAATCTTTTGAAT 132054 Query 67965 TGGAACAGAGCATTTGGGGCA 67985 | ||||| || ||||||| Sbjct 132053 ACGCACAGAACAGCTGGGGCA 132033 Score = 84.2 bits (92), Expect = 3e-11 Identities = 122/171 (71%), Gaps = 6/171 (4%) Strand=Plus/Plus Query 77190 TTTGCTCATCAAGAATTTTATGGATGTAAGATGGGTGCTATCGAATCCACGGAGGGCGAT 77249 ||||| |||||||| ||||| || ||||||||||| | || ||| || || ||||| Sbjct 68888 TTTGCGCATCAAGAGTTTTACGGGTGTAAGATGGGACCGATAGAAAGCAAGGTCGGCGAC 68947 Query 77250 AAATGGGATTTAAA---CTTTCCATTAGTTGTCAGTGGACATATTCACAGCGAACAGAAG 77306 | |||| | ||| | ||| | ||| ||||||| || ||||||| | |||| | Sbjct 68948 AGATGGAA---AAAGTCGTGGCCACTTGTTATCAGTGGCCACATTCACAACAAACAATGG 69004 Query 77307 CCTCAACGAAATATATTTTATCCTGGTAGTGTAATTCAACACGCCTTTGGG 77357 || |||| ||| || | || || ||| | ||| |||||||| |||||| Sbjct 69005 CCGCAACCAAACATTTACTACCCCGGTTCAGCAATGCAACACGCTTTTGGG 69055 >seq2964 Length=11553 Score = 93.3 bits (102), Expect = 6e-14 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 60776 TTCAATTTCTTTAATTTTCTTTTCAAGGATTGCCTTGTCCATTGTCTGAAACTGACTAAC 60835 ||| | |||||||||||| |||| ||| | | || |||||| | | ||||| | | || Sbjct 3029 TTCGACTTCTTTAATTTTGTTTTTAAGCTTAGATTTATCCATTTTTTTAAACTCATTGAC 3088 Query 60836 AAAATAGTCGAGAATCACACTATTGCACTTATCATAGAACTCGACTGATATCCAGGATGC 60895 ||| |||| || || | | |||||||| || || ||||||| ||| | ||| ||||| Sbjct 3089 AAAGTAGTTGATTATGATCTTGTTGCACTTGTCGTAAAACTCGATTGACACCCATGATGC 3148 Query 60896 AATATCAAGGATAAGTTCCTTGCGAACATACTGGCCAGTAATTTGTTTATTAATTTCGTC 60955 ||| || | |||||||| | | | ||||| || |||| ||| || ||| ||| Sbjct 3149 AATCTCCAAAATAAGTTCTTGGGGGACATATGTACCGGTAAATTGCCGATCTGTTTTGTC 3208 Query 60956 ATTGTT 60961 ||||| Sbjct 3209 TTTGTT 3214 Score = 84.2 bits (92), Expect = 3e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 53252 AAACATGAACGCGTTAATAAACCTAAATGATTGTAAAGAATATATGACTATAGCCCTGCA 53311 ||| |||||||| ||||| ||| | || ||||| | |||||| ||||| || | || | Sbjct 2327 AAAGATGAACGCTTTAATCAACTTGAAGGATTGCAGAGAATACATGACAATCACTTTGAA 2268 Query 53312 AGGTAGGCAACACCAGGTAAAGTTGGCTGGAACTGTTGATACACCATATTTTTGTGGGAA 53371 || | |||| | | || | | |||||| | || || || |||||||| Sbjct 2267 TAATAAAGACCACCGGATTAAACTCTCCGGAACTATAGACGATCCCTACTTTTGTGGACG 2208 Query 53372 AGATATATGCGAGGTATTAGGATACAAAAATTTAAAAGATGCACTTCAAAAACATGTTGA 53431 || |||| || |||||||||||||| | ||||||||| |||||| | |||| || Sbjct 2207 TAATGTATGTGACATATTAGGATACAAAGACCCTAAAGATGCAATTCAAAGATATGTAGA 2148 Query 53432 TGATGAAGATAAAA 53445 | |||||||||| Sbjct 2147 AAAAGAAGATAAAA 2134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 704320075165200