Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq345 300 2e-76 seq226 149 6e-31 seq38 111 2e-19 seq7633 93.3 4e-14 seq68 87.8 2e-12 seq2815 84.2 2e-11 seq1233 84.2 2e-11 >seq345 Length=614307 Score = 300 bits (332), Expect = 2e-76 Identities = 991/1522 (65%), Gaps = 28/1522 (2%) Strand=Plus/Minus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||||| | || || | ||| ||||| |||| ||| || | || Sbjct 404462 TCAGGTCTTTGAGCAGATGAGGGTTGACGATCTGGAACTCTCCGGAGAGGACCCTGCGGG 404403 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || ||| || | |||||||||||||||| ||||| ||||| | Sbjct 404402 TGTAGATGTTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 404343 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 ||||||||||| ||| | |||||| ||| | || ||| | || || || Sbjct 404342 ACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCCGTGCTTGGCGATCTTCT 404283 Query 148417 GCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCA 148476 |||||| | ||||||||| || | ||| ||| || ||||||||||||||||| Sbjct 404282 CCTTCAGCAGCTTCCAGTCCCACAGGTCAGTCGGCGTCTTGTCCCACATGTCGTACTGCA 404223 Query 148477 GAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCA 148536 | ||||| | ||| |||| ||| ||||||| ||| || || | ||||| | Sbjct 404222 GGATGCCCCTGCTGACGGGCGAGCCTTCGTACGTCTCGTAGGGGCCCAGTTTGGCCGCGA 404163 Query 148537 GTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA 148596 | |||||||| ||||| || ||| ||||||| || ||||| || || ||||||||| Sbjct 404162 GCTCGCAGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCA 404103 Query 148597 GCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCT 148656 || ||| | ||||| | || ||||| | | || ||||| || | |||| Sbjct 404102 GCTGAGCCTCCGGACTTTCAAAGGGGTAACGCATCAAGATGAAGGCGTCTGCTAAACCCT 404043 Query 148657 GTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC-TCGAGCGGA 148715 | || || | || || |||| ||| ||||||| | | || ||| || ||| Sbjct 404042 GGACTCCGATTCCGATCGGCCTGTGGCGTTTGTTGGACA-TCTCGGCCTCGGGGACCGGG 403984 Query 148716 TAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGT-AATTCTGC 148773 |||| |||| || ||||||||| ||||| || | || | ||| || || | ||| Sbjct 403983 TAGTAGTTGATTTCAATGATCTTGTTCAAGTTTTTG-ACTATCACTTTGGTCACAGATGC 403925 Query 148774 GCAGCAATTCAAAATCGTACTTG---TCATCTACGATGCATCGGTTCACGGCGATAGAGG 148830 ||| || ||| || || || ||| || | | ||| | ||||| || | Sbjct 403924 -CAGTTTTTTAAAGTCATAAGTGCGCTCAGGCGTGACGTACATGTTGAGAGCGATGGATG 403866 Query 148831 CTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGAT 148890 | |||||||| || ||| ||| || | | | |||| || |||| ||| | ||||| | Sbjct 403865 CCAGATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCACAAGT 403806 Query 148891 TGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGT 148950 ||||||| ||||| ||||| |||| || |||||||| |||||||||||||| |||| Sbjct 403805 TGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCTTTGT 403746 Query 148951 ACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGT 149007 ||| ||||||||| || || ||| ||| | || | || | ||| | || | Sbjct 403745 ACAACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGTACCAA---AGCT 403689 Query 149008 CCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCT 149067 ||| || ||| ||| | || |||| ||||||| ||| |||||| || Sbjct 403688 GCTGAGCTTTCACCACACGCTTCACCCTCCCTTCCTTCTCGTATGTAGTGTACAGCTTCT 403629 Query 149068 CGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACC 149127 | ||| |||| || |||| |||||||| || || |||| || || ||||| || |||| Sbjct 403628 CAAACTCCTCCCCCCAGCACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGAGACC 403569 Query 149128 ACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGA 149187 | | || | ||| |||||||| ||||| ||||| | ||| || || || | | Sbjct 403568 AGTCCTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAA 403509 Query 149188 GGTCGC--GCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAA 149245 |||| | || | ||| || || ||| |||| ||| | || | | || Sbjct 403508 GGTCTCTGGCTCTCTGC--TCCTCCTTGCCAGTGTTCTTCTTCAGCTCTAGGAAGTCAAA 403451 Query 149246 TATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC----CTTGCGCTTGCCGC 149301 | ||| ||||| ||||| | ||||| |||| || || ||| | ||||| | Sbjct 403450 CACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTG-TTGCCAC 403392 Query 149302 CCTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGG 149361 | || ||||||| ||| | ||||||| | |||| | ||| || | | || ||| Sbjct 403391 CTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGTTGG 403332 Query 149362 CAGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTG-TGCACGTTGACG 149420 | ||||| ||| | ||| || || | || | | || || | ||| Sbjct 403331 AGTTCCCGTTGGTACCGGCGATGTAGCTCCCAGTGGATCTGATGCAGCTGACCGCT-ACG 403273 Query 149421 CCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCC 149480 || ||||| ||| | |||| || ||| ||||| | || || ||||||||| Sbjct 403272 CCAATGCCTCCGGCAGACTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCT 403213 Query 149481 TCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTG 149540 |||||||||||| ||||||| |||| ||||| | ||| ||||| | || Sbjct 403212 TCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGCGGCCGATTGGTT 403153 Query 149541 CCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTAC 149600 || || ||| | || || |||||| || || | |||| || || | |||| Sbjct 403152 CCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAACCACTTCTCTGACAGCAGATTGTAC 403093 Query 149601 GACTCGA-GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCAT 149659 | ||||| | ||| || ||||| || ||||| || | | || | ||| ||||| Sbjct 403092 GTCTCGATGGCCGC-TTCGATGTCGGTCCCGTGGATCCCAACAGACACCCTCATGAGCAT 403034 Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTAGTGT 149719 |||||||| ||||| ||||| ||| ||||| |||| ||| | || || || Sbjct 403033 GTGCTGCGGGCGCTCGGCCACCTTGCCGTTGATTTTCAGCAGATAGGAGCGCTCCAGAGT 402974 Query 149720 CTTGTAGCCAAAGTACTTGTAG 149741 |||| | || ||| | |||||| Sbjct 402973 CTTGAATCCGAAGAAGTTGTAG 402952 >seq226 Length=808630 Score = 149 bits (164), Expect = 6e-31 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| ||| || ||| | | | || || ||||||||||| Sbjct 361773 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGCC 361715 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| ||||||||| |||||||||||||||||||| |||||| ||| Sbjct 361714 GGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTT 361655 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| |||||||||| || | ||||| ||| ||||| || || || Sbjct 361654 GACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGT 361595 Query 133643 TTTTACGAAAATCTGCATG 133661 || || |||||||||||| Sbjct 361594 CTTGACAAAAATCTGCATG 361576 >seq38 Length=2821725 Score = 111 bits (122), Expect = 2e-19 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | |||||| |||||| ||||||| ||||| ||| | || | Sbjct 1026609 TGTACTCTACGATCTCCGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTTTGCTGGT 1026550 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||| |||||||| ||||||||||| |||||||| || || ||||| ||||| Sbjct 1026549 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTCCCRGTTTCTGTCTGCG 1026490 >seq7633 Length=1847 Score = 93.3 bits (102), Expect = 4e-14 Identities = 115/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| || || || |||| |||| ||||||||| |||||||||||||| ||| Sbjct 1709 TCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTG 1650 Query 133566 TCGGTGATCTTTTGCTTGAGCTG-CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || |||| || |||| ||| ||| | |||| ||||||||| || | |||| Sbjct 1649 TCCTGGATC-TTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCACCTCCAGCGTGAT 1591 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCA 133659 ||| || || || || || || ||||| ||||||| Sbjct 1590 GGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 >seq68 Length=2311667 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||| ||||| || |||| || | ||||||||| |||||||||||||| || Sbjct 1552523 TCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTT 1552464 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | ||| | ||||| | ||||||| || || |||| | Sbjct 1552463 TCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCCACCTCCACCGTGATG 1552404 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || || || || || ||||||||| Sbjct 1552403 GTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATG 1552368 >seq2815 Length=13304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||| | ||||| || ||||||||| || ||| | | | || || |||||||||| Sbjct 315 GGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCA-TCTTCAAGCTGCTTGC 257 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||| | || |||| ||||||||| |||||||| ||||||||||| |||||| || Sbjct 256 TGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCT 197 Query 133582 TGA 133584 ||| Sbjct 196 TGA 194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||| | ||||| || ||||||||| || ||| | | | || || |||||||||| Sbjct 2993 GGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCA-TCTTCAAGCTGCTTGC 2935 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||| | || |||| ||||||||| |||||||| ||||||||||| |||||| || Sbjct 2934 TGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGGATCTTGGCCT 2875 Query 133582 TGA 133584 ||| Sbjct 2874 TGA 2872 >seq1233 Length=91233 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||| | ||||| || ||||| ||| || ||| | | | || || |||||||||| Sbjct 81255 GGTTGACACCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCAAGCTGCTTGC 81313 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 ||| | || |||| ||||||||| |||||||||||||||||||| |||||| || Sbjct 81314 TGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCT 81373 Query 133582 TGA 133584 ||| Sbjct 81374 TGA 81376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483240816393400