Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq226 111 4e-19 seq2815 86.0 1e-11 seq68 84.2 5e-11 >seq226 Length=808630 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||| |||| ||||| |||| Sbjct 361580 CAGATTTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGAC 361639 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| ||||| || || || ||||| || || ||| || Sbjct 361640 ACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGCAG 361699 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||||||||| |||||| |||||||||| | || || |||| |||||| || Sbjct 361700 AGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACATC 361759 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| ||||| || Sbjct 361760 CAGAAGGAGTCCACTCTCCACCTGGT 361785 >seq2815 Length=13304 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || |||||||| || ||| || || || ||||||||| | ||| Sbjct 202 AAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGCAGAGGCTGATCTTCGCCAGCAAG 261 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | |||||||| | || || ||||||||||| ||||||| | ||| || |||||| Sbjct 262 CAGCTTGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGTGTCAACCCTTCAC 321 Query 206374 CTTGT 206378 || || Sbjct 322 CTGGT 326 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || |||||||| || ||| || || || ||||||||| | ||| Sbjct 2880 AAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGCAGAGGCTGATCTTCGCCAGCAAG 2939 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | |||||||| | || || ||||||||||| ||||||| | ||| || |||||| Sbjct 2940 CAGCTTGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGTGTCAACCCTTCAC 2999 Query 206374 CTTGT 206378 || || Sbjct 3000 CTGGT 3004 >seq68 Length=2311667 Score = 84.2 bits (92), Expect = 5e-11 Identities = 154/225 (68%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 206154 AAGTAAGGCTAAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTT 206213 || ||||| || ||| ||||| ||| || || ||||| || || || ||||| | Sbjct 1552356 AAATAAGGTAAACATG---CAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACGGT 1552412 Query 206214 GGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGG 206273 ||| ||||| |||||| | || | || ||| ||||| || ||||||||||| Sbjct 1552413 GGAGGTGGAGCACGGTGACACCATAGAGACCGTGAAGGCTAAGATCCAGGAAAAAGAAGG 1552472 Query 206274 AATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGAC 206333 || || ||| || ||||| || || || || || ||| |||||||| | |||| Sbjct 1552473 CATCCCTCCTGACCAGCAGAGACTGATTTTTGCTGGCAAACAGCTGGAAGATAGCCGGAC 1552532 Query 206334 TTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 || |||| |||||| || | || || || || || ||||| || Sbjct 1552533 CCTGTCCGACTACAACATCGATAAGGAATCAACCCTGCACCTGGT 1552577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181369793176985