Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq345 237 1e-57 seq7633 91.5 1e-13 seq38 91.5 1e-13 seq226 82.4 7e-11 >seq345 Length=614307 Score = 237 bits (262), Expect = 1e-57 Identities = 959/1490 (64%), Gaps = 42/1490 (3%) Strand=Plus/Minus Query 146938 TTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTA 146997 ||||| ||| | | ||| | ||||| || ||||| | || ||||| |||| || || Sbjct 404394 TTGCTGGTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTG 404335 Query 146998 GGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA- 147056 ||||| ||||| || || |||| || |||| | ||| || ||||||| Sbjct 404334 GGCATCGGCGCCAGCAGCAGGCTGTTTCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGC 404275 Query 147057 AGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC 147116 || || ||||||||||| | |||||| || ||||||||||||||| || | || Sbjct 404274 AGCTT-CCAGTCCCACAGGTCAGTCGGCGTCTTGTCCCACATGTCGTACTGCAGGATGCC 404216 Query 147117 TCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCC--GTCGCGCTGCGCCAATTCA 147174 | ||| |||| ||| || |||| |||| || || || ||| | || Sbjct 404215 CCTGCTGACGGGCGAGCCTTCGTACGTCTCGTAGGGGCCCAGTTTGGCCGCG--AGCTCG 404158 Query 147175 CAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTC 147234 ||||| ||||| || || | ||||| ||||| || || || |||| || | Sbjct 404157 CAGCTGGCCTCCAGAGCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGA 404098 Query 147235 GCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATA 147294 || || || || | || ||||| | | ||||| || || |||||||||| Sbjct 404097 GCCTCCGGACTTTCAAAGGGGTAACGCATCAAGATGAAGGCGTCTGCTAAACCCTGGACT 404038 Query 147295 CCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTCGCT-ATGGGATAGTG 147353 |||| ||||| || | || || |||| || || |||| | || |||| Sbjct 404037 CCGATTCCGATCGGCCTGTGGCGTTTGTTGGACATCTCGGC-CTCGGGGACCGGGTAGTA 403979 Query 147354 GTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTT 147413 |||| ||||| |||||||| | ||| |||| ||||| || | | | ||||| Sbjct 403978 GTTGATTTCAATGATCTTGTTCAAGTTTTTGACTATCACTTTGGTCACAGATGCCAGTTT 403919 Query 147414 CTCGAAATCATAAGTCCCGTCTT-CGACACGTACGCATTGGTTCACGGCGATAGACGCCA 147472 | || |||||||| | || || |||||| || ||| | ||||| || |||| Sbjct 403918 TTTAAAGTCATAAGTGCGCTCAGGCGTGACGTAC--AT--GTTGAGAGCGATGGATGCCA 403863 Query 147473 GATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGC 147532 ||||||| || ||| ||| |||||| | |||| | ||||| || | ||||| ||||| Sbjct 403862 GATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCACAAGTTGC 403803 Query 147533 TGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGA 147592 |||| || ||| |||| ||| ||||| ||||| |||| ||||||||||||||| | | Sbjct 403802 TGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCTTTGTACA 403743 Query 147593 GCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAGGTCCT 147649 ||||||||| |||||||| || | || | ||| ||| | || | || Sbjct 403742 ACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGTACCAA---AGCTGCT 403686 Query 147650 GCGCTCGCACC---CGCTGCCGATAGCGGCCC-TCGTTTTCGTACCGCTCGTACAACCGC 147705 | ||| |||| |||| | | | ||| || || ||||| ||||| | | Sbjct 403685 GAGCTTTCACCACACGCTTC----ACCCTCCCTTCCTTCTCGTATGTAGTGTACAGCTTC 403630 Query 147706 TCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGAC 147765 |||||||| || || |||| ||| | || || ||||||| | ||||||||||| ||| Sbjct 403629 TCAAACTCCTCCCCCCAGCACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGAGAC 403570 Query 147766 CACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATA 147825 || | || | || || ||| ||||| || || | |||||| || || | | Sbjct 403569 CAGTCCTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCATAGAAA 403510 Query 147826 AGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTAT 147883 || || | || || ||| ||||| ||| |||| |||| | || | | | Sbjct 403509 AGGTCTCTGGCTCTCTGC--TCCTCCTTGCCAGTGTTCTTCTTCAGCTCTAGGAAGTCAA 403452 Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGC 147940 | | ||| ||||| || || | ||| | ||| | || || | | || || | Sbjct 403451 ACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTGTTGCCAC 403392 Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 | || ||||| | ||| | ||||||| | || | || |||||| |||| ||| | | Sbjct 403391 CTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGTTGG 403332 Query 148001 CAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACG 148059 | |||||||| ||| | ||| || || || | | || || | ||| Sbjct 403331 AGTTCCCGTTGGTACCGGCGATGTAGCTCCCAGTGGATCTGATGCAGCTGACCGCT-ACG 403273 Query 148060 CCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCG 148119 |||||||| ||| | |||| || ||| ||||| | || || ||||||||| Sbjct 403272 CCAATGCCTCCGGCAGACTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCT 403213 Query 148120 TCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCG---C 148176 ||||||||||||| ||| | | | ||||| || || ||| ||||| ||| Sbjct 403212 TCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGCGG---CCGATTG 403156 Query 148177 GTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGA 148236 ||||| || ||| || || ||| ||||| || ||| | || | || || Sbjct 403155 GTTCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAACCACTTCTCTGACAGCAGATTG 403096 Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 |||||||| || || ||||||||||| ||||| || || | | || | ||||||| Sbjct 403095 TACGTCTCGATGGCCGCTTCGATGTCGGTCCCGTGGATCCCAACAGACACCCTCATGAGC 403036 Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 |||||||| || || ||||| || | |||||| || || ||||| || || Sbjct 403035 ATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGATTTTCAGCAGATAGGAGCGCTCCAGA 402976 Query 148357 GTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 || ||| | || ||| | ||||| |||||| || ||| |||||| Sbjct 402975 GTCTTGAATCCGAAGAAGTTGTAGGAGAAATCTCTGTCATAAATGATGGC 402926 >seq7633 Length=1847 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 ||| |||| |||| || | | |||| || || || |||| ||||||| || ||| || Sbjct 1773 CAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGACAGGGTCCG 1714 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| || | | | || || | ||| || || ||||| |||||||| Sbjct 1713 GCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTC 1654 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGT-TCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 ||| || || || |||| ||||| || | | || |||||||| || | || Sbjct 1653 TTTGTCCTGGATCTTAGCTTTC-ACTGTCTCTATGTTGTCATCGGGCTCCACCTCCAGCG 1595 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCA 132122 | | || |||||||| || || || | ||| ||||||| Sbjct 1594 TGATGGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 >seq38 Length=2821725 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||||| || | ||||||||||||| |||| ||| |||| |||||||| | Sbjct 1026609 TGTACTCTACGATCTCCGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTTTGCTGGT 1026550 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| |||| ||||| ||||| ||| |||||||||| || Sbjct 1026549 TGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGG 1026510 >seq226 Length=808630 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || |||||||||||| || ||| || |||||| ||||| || |||| Sbjct 361770 GACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCG 361711 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||| || || || || || | Sbjct 361710 AAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACA 361651 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || || | |||||||| || | || | || || ||||| || || || Sbjct 361650 TTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTG 361591 Query 132110 ATGAAAATCTGCATG 132124 | |||||||||||| Sbjct 361590 ACAAAAATCTGCATG 361576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476433751692600