Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq3 107 6e-20 seq63 100 9e-18 seq56 98.7 3e-17 seq4 98.7 3e-17 seq7603 95.1 4e-16 seq5054 95.1 4e-16 seq4927 89.7 2e-14 seq3402 89.7 2e-14 seq3287 86.0 2e-13 seq900 78.8 3e-11 >seq3 Length=9842332 Score = 107 bits (118), Expect = 6e-20 Identities = 73/81 (90%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 2760 GTGTTTATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCT 2819 |||| |||| | ||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 3919828 GTGTGTATGCC-GAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCT 3919770 Query 2820 GGTTCAACCCCGGGCTTCAGC 2840 ||||||| |||||| ||| || Sbjct 3919769 GGTTCAATCCCGGGTTTCGGC 3919749 >seq63 Length=2333051 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 278705 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 278646 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 278645 CCCGGGTTTCGGC 278633 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 181140 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 181081 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 181080 CCGGGTTTCGGC 181069 >seq56 Length=2337707 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 833047 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 833106 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 833107 CCGGGTTTCGGC 833118 >seq4 Length=9009805 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 4270114 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 4270173 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 4270174 CCGGGTTTCGGC 4270185 >seq7603 Length=3941 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 3857 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 3798 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3797 CCGGGTTTCGGC 3786 >seq5054 Length=4382 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||||||||||||| | Sbjct 1442 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCCCTGGTTCAATC 1501 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1502 CCGGGTTTCGGC 1513 >seq4927 Length=7257 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||| ||||||||||| | Sbjct 6945 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGGCCCTGGTTCAATC 7004 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7005 CCGGGTTTCGGC 7016 >seq3402 Length=11537 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||||| ||||||||| | Sbjct 14 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGTCTCTGGTTCAATC 73 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 74 CCGGGTTTCGGC 85 >seq3287 Length=9968 Score = 86.0 bits (94), Expect = 2e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| | ||||||||||||| |||| ||||||||||| | Sbjct 1855 GCCGAAATAGCTCAGTTGGGAGAGCGTCAGACTGAAGATCTGAAGGGCCCTGGTTCAATC 1796 Query 2829 CCGGGCTTCAGC 2840 | ||| ||| || Sbjct 1795 CTGGGTTTCGGC 1784 >seq900 Length=135963 Score = 78.8 bits (86), Expect = 3e-11 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||| |||||||||||| | ||||||||||||| |||| ||||||||||| | Sbjct 123204 GCCGAAATAGCACAGTTGGGAGAGTGTCAGACTGAAGATCTGAAGGGCCCTGGTTCAATC 123145 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 123144 CCGGGTTT 123137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15844436621325