Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq340 167 3e-35 seq212 161 1e-33 seq344 158 2e-32 seq408 152 7e-31 seq110 152 7e-31 seq11 113 6e-19 seq17 111 2e-18 seq7 109 8e-18 seq38 104 3e-16 seq2653 95.1 2e-13 seq345 93.3 6e-13 seq558 89.7 7e-12 >seq340 Length=642261 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| |||| |||| || |||| ||||| Sbjct 187101 TACAAGGTGCTGAAGCAGGTCCACCCTGACACCGG-----CATC-TCGTCCAAGGCCATG 187048 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||||| ||| Sbjct 187047 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCCGAGGCCTCCCGC 186988 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||| | ||| ||| | | | ||||||||||||||||||||| Sbjct 186987 CTGGCTCACTACAACAAGAGGTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 186928 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||||||||| || ||||| |||| Sbjct 186927 CTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGAACCA 186879 >seq212 Length=975815 Score = 161 bits (178), Expect = 1e-33 Identities = 175/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| |||||| |||| |||| ||| |||| ||| Sbjct 173106 TCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 173159 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| || ||||| || |||| ||||||| | ||||||| | Sbjct 173160 TGAGCATCATGAACTCGTTCGTRAACGARATCTTCGAGCGCATCGCCTCCGAGGCGTCCC 173219 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | || ||||||| | ||| ||| | | | ||||||||||||||||||| Sbjct 173220 GCCTGGCTCACTACAACAAGAGGTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGC 173279 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 |||| | ||| ||| || ||||||| |||||| || || ||||| |||| Sbjct 173280 GCCTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCGGTGTCTGAGGGAACCA 173330 Score = 86.0 bits (94), Expect = 9e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | || ||||||| | ||| ||| | | | |||||||||||||||||| Sbjct 181370 CGCCTGGCTCACTACAACAAGAGGTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTG 181311 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| |||||| || || ||||| |||| Sbjct 181310 CGCCTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCGGTGTCTGAGGGAACCA 181259 >seq344 Length=691188 Score = 158 bits (174), Expect = 2e-32 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||||||||| |||| | ||| ||| |||| ||||| Sbjct 205736 TACAAGGTGCTGAAGCAGGTGCACCCGGACACCGGT-----ATC-TCCTCCAAGGCCATG 205789 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| ||||||| ||| Sbjct 205790 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGTCCGAGGCGTCCCGC 205849 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || |||||| | ||| ||| | | |||||||||||||| || ||| Sbjct 205850 CTGGCCCACTATAACAAGAGGTCCACCATCACGTCCAGGGAGATCCAGACCGCGGTCCGC 205909 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | | | ||| || ||||||| ||||||||| ||||||||||||| Sbjct 205910 CTGCTGCTACCCGGAGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 205958 >seq408 Length=440226 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||| ||||| |||| |||| || |||| ||||| Sbjct 7656 TACAAAGTGCTGAAGCAGGTTCACCCTGACACCGG-----CATC-TCGTCCAAGGCCATG 7603 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | |||||||| ||| Sbjct 7602 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCCGAGGCCTCCCGC 7543 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||| | ||| ||| | | | ||||||||||||||||||||| Sbjct 7542 CTGGCTCACTACAACAAGAGGTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGC 7483 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || |||||| |||||| || || ||||| |||| Sbjct 7482 CTCCTGCTGCCCGGAGAGTTGGCCAAGCACGCTGTGTCTGAGGGAACCA 7434 >seq110 Length=1683906 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| ||||| |||| | ||| || |||| ||||| Sbjct 449218 TACAAGGTGCTGAAGCAGGTCCACCCGGATACCGGT-----ATC-TCTTCCAAGGCCATG 449271 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| | | ||||| ||| Sbjct 449272 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCTCTGAGGCGTCCCGC 449331 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||| | ||| ||| | | | ||||| ||||||||||||||| Sbjct 449332 CTGGCTCACTACAACAAGAGGTCCACCATCACCTCCAGGGAGATTCAGACCGCCGTGCGC 449391 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || ||||||| ||| ||||| || |||||||||| Sbjct 449392 CTCCTGCTGCCCGGTGAGCTGGCCAAGCATGCCGTGTCTGAGGGCACCA 449440 >seq11 Length=5004986 Score = 113 bits (124), Expect = 6e-19 Identities = 151/209 (72%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| ||| ||||| ||| |||| || || Sbjct 4321990 TACAAGGTGCTGAAGCAGGTCCACCCCGACACCA-----CCATC-TCCTCCAAGGCCGTG 4322043 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||| || |||||| |||| |||| ||||||| | | |||| ||| Sbjct 4322044 AGCTTCATGAACTCATTCGTCAACAACATTTTCGAGCGCATCGCCTCGAAGGCTTCCCGC 4322103 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | || ||||||| | ||| ||| | | | |||||||||||| | |||||| Sbjct 4322104 CTGGCTCACTACAACAAGAGGTCCACCATCACCTCCAGGGAGATCCAGACCACAGTGCGC 4322163 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCA 725122 || | ||| ||| || ||||||| ||| Sbjct 4322164 CTCCTGCTGCCCGGTGAGCTGGCCAAGCA 4322192 >seq17 Length=4241957 Score = 111 bits (122), Expect = 2e-18 Identities = 168/234 (72%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGC---ACCCCCGA-ACCGTTGGGCCATCCTCCAACAAGTC 724969 ||||||||||| ||||||| | ||||| || |||| | |||||| |||| | Sbjct 1782948 TACAAGGTGCTGGAGCAGGTCCCCCACCCCTGACACCG---GCATCTCCTCC--CAAGGC 1783002 Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029 || | ||||||||||||| | ||||||||| || | |||||| | ||||||| Sbjct 1783003 CAAGAGCATCATGAACTCGTCCGCCAACGACATCTTCAAGTGCATCGCCTCCGAGGCTTC 1783062 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 |||||||| | || ||||||| | ||| ||| | | | ||||| |||||| |||| Sbjct 1783063 CCGCCTGGCTCACTACAACAAGAGGTCCACCATCACCTCCAGGGAGATTCAGACCCCCGT 1783122 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG-GCACCA 725142 | |||| | ||| ||| || ||||| | |||||||| || |||| |||||| Sbjct 1783123 CCACCTGCTGCTGCCCGGAGAGCTGGCTAAACACGCCGTGTCTGAGGAGCACCA 1783176 >seq7 Length=5755497 Score = 109 bits (120), Expect = 8e-18 Identities = 127/172 (74%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 724969 CCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCG 725028 ||||| ||||||||||| || || |||||| || |||| | |||| ||| ||||| Sbjct 1443033 CCATGAGCATCATGAACTCCTTCGTGAACGACCTGTTCGAGAGAATCGCCACGGAGGCGT 1443092 Query 725029 GTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 |||||||| | | |||||||||| ||| ||| || | ||| | |||||||||| Sbjct 1443093 CCCGCCTGGCACAGTACAACAAGCGCTCCACCATCACCAGCAGGGAGGTGCAGACCGCCG 1443152 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | | ||| | ||| ||| || ||||| | |||||| || ||||||||||| Sbjct 1443153 TCAGGCTGCTGCTGCCCGGGGAGCTGGCYAAGCACGCGGTGTCCGAGGGCAC 1443204 >seq38 Length=2821725 Score = 104 bits (114), Expect = 3e-16 Identities = 90/112 (80%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| |||| | |||||||||||| | ||| | |||||||||||||||| |||| || Sbjct 1027417 TGCTGTTGGCCCCGATGCCCACGGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTCGA 1027476 Query 262994 TCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTT 263045 |||||| |||||||||||||||||| ||| | |||||||| || || || Sbjct 1027477 TCGAGGCGTACACGAGCAACATCTACACTCGCAGGGTGCTCTCAGGAGAGTT 1027528 Score = 100 bits (110), Expect = 4e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 262091 CAGATCTGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTAC 262150 ||| | |||| ||||| ||| | | || | || || || ||||| |||||| ||||| Sbjct 1026465 CAGCTGTGGTACGCCATCATCGAGTCGCAGACAGAAACYGGGACGCCTTACATGCTCTAC 1026524 Query 262151 AAGGACGCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAGGCCAAC 262210 ||||||||| |||| || ||||||||||| ||||||||||||| | | |||| Sbjct 1026525 AAGGACGCCTGCAACAGGAAGAGCAACCAGCAAAACCTGGGCACCATCAAATCCAGCAAC 1026584 Query 262211 CTGTGCACCGAGATCGT 262227 |||||||| |||||||| Sbjct 1026585 CTGTGCACGGAGATCGT 1026601 >seq2653 Length=13515 Score = 95.1 bits (104), Expect = 2e-13 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 1455964 GAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATC 1456023 ||||| || | |||||||| | | || ||||| |||||||||||||| || |||||| Sbjct 11122 GAGGTGCAGGTCCCAGAGGCCAGGTGTTTCTACGGCTTCCAGATCGCCATAGAGAACATC 11181 Query 1456024 CACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 |||||||| | ||| || ||||||||||||||| ||||||| || Sbjct 11182 CACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGGAGCC 11228 >seq345 Length=614307 Score = 93.3 bits (102), Expect = 6e-13 Identities = 132/186 (71%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 262913 AGCATGGCCTGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGA 262972 |||| ||| || | ||| |||| |||||| ||||||||||| | || | |||| Sbjct 404295 AGCACGGCGTGAGAAACAGCCTGCTGCTGGCGCCGATGCCCACGGCGTCCACCGCCCAGA 404354 Query 262973 TCCTGGGCAACACCGAGGCGTTCGAGGTCATCACGAGCAACATCTACACGCGCCGCGTGC 263032 |||||||||||| |||| | |||||| ||| |||||||||||||| ||| | || | Sbjct 404355 TCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTCC 404414 Query 263033 TCTCGGGCGACTTTACCGTGGTCAACCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCC 263092 |||| || || || | ||||||| || ||| |||| | || || | | || | Sbjct 404415 TCTCCGGAGAGTTCCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACGGAGAGGGGGC 404474 Query 263093 TGTGGA 263098 |||||| Sbjct 404475 TGTGGA 404480 >seq558 Length=349536 Score = 89.7 bits (98), Expect = 7e-12 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1455964 GAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATC 1456023 || ||||| || | ||||| | | || ||||| |||||||||||||| || |||||| Sbjct 126859 GAAGTCCAGGTGACTGAGGCCAGGTGTTTCTACGGCTTCCAGATCGCCATGGAGAACATC 126800 Query 1456024 CACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 |||||||| | ||| || ||||||||||||||| ||||||| || Sbjct 126799 CACTCTGAGATGTACAGCCTGCTGATCGACACCTACATCAAGGAGCC 126753 Score = 89.7 bits (98), Expect = 7e-12 Identities = 89/114 (78%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||||| || ||||| ||||| ||| | |||||||||| ||||| Sbjct 127260 GAGCCGCTGCTGAAGGACAACCCTCGTCGCTTCGTCATCTTCCCCATCCAGTACCACGAC 127201 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGT 1455829 || ||| | |||||| || ||||||||||||||||| ||||| || |||||||| Sbjct 127200 ATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGT 127148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7174938382005170