Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq226 122 8e-23 seq68 105 6e-18 >seq226 Length=808630 Score = 122 bits (134), Expect = 8e-23 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| || ||| || | || ||||||||||| || || || Sbjct 361768 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAA 361709 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||| | || ||||||||| |||||| ||| | | | Sbjct 361708 GATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATT 361649 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||||| ||||| || || || || | || || || Sbjct 361648 TTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGAC 361589 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 361588 AAAAATCTGCAT 361577 >seq68 Length=2311667 Score = 105 bits (116), Expect = 6e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| | |||||||| |||| || ||| || || |||||||| || || ||||| Sbjct 1552559 TCCTTATCGATGTTGTAGTCGGACAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAA 1552500 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| | ||||||||| | ||| | || || || ||| |||||| ||||| || Sbjct 1552499 ATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTC 1552440 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | ||||||||||||||||| || ||||| || | || |||||| Sbjct 1552439 TCTATGGTGTCACCGTGCTCCACCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACA 1552380 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 1552379 AAGATCTGCAT 1552369 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| | |||||||| |||| || ||| || || |||||||| || || ||||| Sbjct 1552786 TCCTTATCGATGTTGTAGTCGGACAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAA 1552727 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| | ||||||||| | ||| | || || || ||| |||||| ||||| || Sbjct 1552726 ATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTC 1552667 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | ||||||||||||||||| || ||||| || | || |||||| Sbjct 1552666 TCTATGGTATCACCGTGCTCCACCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACA 1552607 Query 35726 AATATCTGCAT 35736 || |||| ||| Sbjct 1552606 AAGATCTTCAT 1552596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450625763907800