Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq345 127 2e-24 seq68 104 2e-17 seq7633 98.7 1e-15 seq226 95.1 1e-14 >seq345 Length=614307 Score = 127 bits (140), Expect = 2e-24 Identities = 894/1427 (63%), Gaps = 36/1427 (3%) Strand=Plus/Plus Query 7529 TGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGG 7588 || |||||||||||||| | || || || || |||||||| || | ||| | | Sbjct 402993 TGCTGAAAATCAACGGCAAGGTGGCCGAGCGCCCGCAGCACATGCTCATGAGGGTGTCTG 403052 Query 7589 TGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGA 7648 | || || ||||| ||||| || || ||| | || |||||| | || |||| || Sbjct 403053 TTGGGATCCACGGGACCGACATCGAAGCGGCCATCGAGACGTACAATCTGCTGTCAGAGA 403112 Query 7649 AACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCAATTGT 7708 | ||| || ||||| || || || | || ||| || || || ||| || ||| Sbjct 403113 AGTGGTTCACTCACGCCTCTCCGACTCTCTTCAACGCAGGAACCAATCGGCCGCAGCTGT 403172 Query 7709 CCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCTGC 7768 || || || ||||| ||||| || ||||||||||| ||||| ||| |||| ||| Sbjct 403173 CCAGCTGCTTCTTGCTCGCCATGAAAGACGACAGCATCGAAGGCATCTACGACACCCTGA 403232 Query 7769 GCGATTGCGCCAATATTTCCAAATACGGCGGCGGAATAGGTCTGAACGTAAACGACGTGC 7828 | |||||| |||||||| | | ||| || || || | || | | | | Sbjct 403233 AGCAGTGCGCCCTCATTTCCAAGTCTGCCGGAGGCATTGGCGTAGCGGTCAGCTGCATCA 403292 Query 7829 GCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGCCCATGT 7888 | ||| || ||| ||||| |||||||| || ||| ||| | | |||||| Sbjct 403293 GATCCACTGGGAGCTACATCGCCGGTACCAACGGGAACTCCAACGGGCTGGTTCCCATGC 403352 Query 7889 TGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAAGCGCAAAGGCGCCG 7948 || | || | ||| ||| | | || | || || || || || || |||| | ||| Sbjct 403353 TGAGAGTTTACAACAACACCGCTCGCTACGTCGATCAAGGTGGCAA---CAAAAGACCCG 403409 Query 7949 ----CT--GCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAAATCTGC 8002 || ||||| || |||||||| ||||| ||| | | | | ||| | ||| Sbjct 403410 GGGCCTTCGCCATGTACTTGGAGCCTTGGCATTTTGACGTGTTTGACTTCCTAGAGCTGA 403469 Query 8003 GTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCGCGATCTATTCTTCGGATTGTGGGTG 8061 |||| || || || ||| | ||| | || || |||| | ||||| | Sbjct 403470 AGAAGAACACTGGCAAGGAGGAGCAG-AGAGCCAGAGACCTTTTCTATGCCCTGTGGATC 403528 Query 8062 CCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTGCCCCGAT 8121 ||||| ||||| |||| ||| || | | || | ||||| || ||||| ||| | Sbjct 403529 CCCGACCTGTTCATGAAGCGAGTGGAGAGCAACCAGGACTGGTCTCTGATGTGTCCCAAC 403588 Query 8122 CGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAAACAATAC 8181 || || | | | | || | ||||| | |||||| |||| Sbjct 403589 GAGTGTCCGGGGCTCGACGAGTGCTGGGGGGAGGAGTTTGAGAAGCTGTACACTACATAC 403648 Query 8182 GAACACGACGGC---GCGTA-CGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGCCAT 8237 || | || || | | | |||| || ||||||| | | || |||||| Sbjct 403649 GAGAAGGAAGGGAGGGTGAAGCGTGTGG----TGAAAGCTCAGCAGCTTTGGTACGCCAT 403704 Query 8238 TATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGC 8297 || || | || | || ||||| | |||||||||| ||||||||||||| |||||| Sbjct 403705 CATAGAGTCCCAGACGGAGACCGGAACGCCGTACATGTTGTACAAAGACGCGTGCAACAG 403764 Query 8298 CAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGT 8357 || ||||| || || |||||||||| |||||||| ||||| | || | || Sbjct 403765 GAAGAGCAACCAGCAGAATCTGGGCACCATCAAGTGCAGCAACTTGTGCACGGAGGTCGT 403824 Query 8358 ACAGTACAGC-GCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACG 8416 | |||| | ||| ||||||| ||||| ||||||||||| || || | | | ||| Sbjct 403825 GGAATACACCAGCG-CCGACGAGGTGGCAGTTTGCAATCTGGCATCCATCGCTCTCAACA 403883 Query 8417 CGTTCGTTGATCGACG-CTCA-AACACTTACGACTTTGAACAATTGAAAAACGCCGTG-- 8472 || ||| ||| || | |||||| |||||| || || || | | ||| Sbjct 403884 TGTACGT-----CACGCCTGAGCGCACTTATGACTTTAAAAAACTGGCA---TCTGTGAC 403935 Query 8473 -CAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGA 8531 |||||| || || || | |||||||| |||| | || || | || Sbjct 403936 CAAAGTGATAGTCAAAAACTTGAACAAGATCATTGAAATCAACTACTACCCGGTCCCCGA 403995 Query 8532 AGCGCGCG-TATCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCG 8590 || || | | || |||| |||||||| || | || | || || || ||| | || | Sbjct 403996 GGC-CGAGATGTCCAACAAACGCCACAGGCCGATCGGAATCGGAGTCCAGGGTTTAGCAG 404054 Query 8591 ACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAA 8650 |||| || | || |||| ||||| ||||| | || || | |||||||||| Sbjct 404055 ACGCCTTCATCTTGATGCGTTACCCCTTTGAAAGTCCGGAGGCTCAGCTGCTCAACATCC 404114 Query 8651 AAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAAT 8710 | || || || | || |||| ||| | || |||||||| | || || || Sbjct 404115 AGATGTTTGAGACCATCTACTACGCCGCTCTGGAGGCCAGCTGCGAGCTCGCGGCCAAAC 404174 Query 8711 TGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACA 8770 ||||| | ||||| |||||| ||| || | |||| | || || |||| ||||||| Sbjct 404175 TGGGCCCCTACGAGACGTACGAAGGCTCGCCCGTCAGCAGGGGCATCCTGCAGTACGACA 404234 Query 8771 TGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTC 8830 ||||| | ||||| || ||||| | |||| |||| || || || Sbjct 404235 TGTGGGACAAGACGCCGACTGACCTGTGGGACTGGAAGCTGCTGAAGGAGAAGATCGCCA 404294 Query 8831 AATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAA 8890 | ||| || | || ||| || |||| |||||||| || | || || || | Sbjct 404295 AGCACGGCGTGAGAAACAGCCTGCTGCTGGCGCCGATGCCCACGGCGTCCACCGCCCAGA 404354 Query 8891 TAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 | |||| |||||||| ||| | ||| ||| ||||| |||| | ||| Sbjct 404355 TCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGCAACATCTAC 404401 >seq68 Length=2311667 Score = 104 bits (114), Expect = 2e-17 Identities = 164/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| || |||| || ||||| || || |||||||| | |||||||||||| Sbjct 1552593 CCTCCTCAGA--CGCAGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGAC 1552536 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||| |||||||||| | |||||| || || || Sbjct 1552535 AGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGG 1552476 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGAT--TCCA 134664 |||||||||||||| || || || || || | || | ||||| || | |||| Sbjct 1552475 ATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTC--ACCGTGCTCCA 1552418 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 | || | || ||||| ||||| || | || || || || || ||||| || Sbjct 1552417 CCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATGTT 1552366 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || ||||| || | |||||||| | |||||||||||| Sbjct 1552822 CCACCTCTCAGACGCAGGACCAGGTGCAGGGGTGATTCCTTATCGATGTTGTAGTCGGAC 1552763 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||| |||||||||| | |||||| || || || Sbjct 1552762 AGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGG 1552703 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 |||||||||||||| || || || Sbjct 1552702 ATGCCTTCTTTTTCCTGGATCTT 1552680 >seq7633 Length=1847 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| || ||||| || || |||||||| || |||| ||||||| | ||| | Sbjct 1769 CGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGACAGGGTCCGGCTA 1710 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || |||||||| || |||||||||| | |||||| || || || ||||||||||| Sbjct 1709 TCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTG 1650 Query 134619 TCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATG 134678 || || || || ||| || | || | |||| | ||||| || || || ||| Sbjct 1649 TCCTGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCACCTCCAGCGTGATG 1590 Query 134679 GTTTTACCGGTTAAAGTTTTAACGAAAATTTGCA 134712 || ||||| || | || || ||||| || |||| Sbjct 1589 GTCTTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 134499 CGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAG 134558 |||| || ||||| || || |||||||| || ||||||||||| | ||| | Sbjct 1541 CGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCTGACAGGGTCCGGCTA 1482 Query 134559 TCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTT 134618 || || |||||||| || |||||||||| | |||||| || || || ||||||||||| Sbjct 1481 TCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTG 1422 Query 134619 TCTTGAATTTT 134629 || || || || Sbjct 1421 TCCTGGATCTT 1411 >seq226 Length=808630 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || ||||| || ||||| ||||| || |||||||||||| Sbjct 361803 CCACCCCTCAGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 361744 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || |||| | |||||| || || || Sbjct 361743 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGG 361684 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | ||||| Sbjct 361683 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACC 361624 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | || || || ||||| ||||| || Sbjct 361623 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATGTT 361574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505210233858200