Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq42 100 4e-16 seq37 84.2 3e-11 >seq42 Length=2906915 Score = 100 bits (110), Expect = 4e-16 Identities = 184/270 (68%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 214604 GAAGGAGATAGCTGTCGAGCTGGAGGCCTTCTACGGTGATATCGAAGCCGTCGAACTCTA 214663 ||| || || |||| |||||||| | ||||| || | || ||||| || ||||| Sbjct 2307475 GAAAGAAATGGCTGCGTTGCTGGAGGAGATGTACGGCGACGTGGACGCCGTGGAGCTCTA 2307416 Query 214664 CGCTGATTTCCTCGCTGAAAAACCGTGTCCCGATGCCATCCTCGGTGACGGCGTCCTCGA 214723 | | | | || | || || || | ||| | |||||| |||| || | | || Sbjct 2307415 CCCGGGCCTGCTGGTGGAGAAGCCCCGGCCCAACGCCATCTTCGGGGAGACAATGGTGGA 2307356 Query 214724 GTCGGGGGCTCCGTTCTCCCTGAGGGGACTCGCGGCGAACGTCATCTGCTCCCCGGGCTA 214783 | ||||||||| |||||||| | ||| || || ||| |||||||||||||| || Sbjct 2307355 GATGGGGGCTCCTTTCTCCCTCAAGGGCCTGCTGGGGAATCCCATCTGCTCCCCGGAGTA 2307296 Query 214784 CTGGAAACGCAACACACTCGGTAGCTCCGCGAGTTTCAACATCGTGAGGAGCGCGACCCT 214843 |||||| | || ||| |||| || || | | ||| ||||||| | | ||| |||| Sbjct 2307295 CTGGAAGCCCAGCACCTTCGGAGGCAGCGTGGGCTTCGACATCGTCAACACCGCCTCCCT 2307236 Query 214844 TCAGTCTCTCATCTGTAGCAACGTCAAGGG 214873 ||| ||| |||| | |||||| ||||| Sbjct 2307235 GCAGAGGCTCGTCTGCAACAACGTGAAGGG 2307206 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 214098 ACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGC 214157 ||||| |||||| || || ||||| ||||| |||| |||| |||||||| | || | Sbjct 2308969 ACGAGGCGTTTGGYCTGGTCCCCGGCCTCATGATGTATGCCACCATCTGGCTCCGTGAAC 2308910 Query 214158 ACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGT 214217 ||||| | || || ||||||||||| ||| ||||| || ||| | |||||| || | Sbjct 2308909 ACAACCGAGTCTGTGACGTGCTGAAGGAAGTTCACCCAGACTGGGATGACGAAAGACTCT 2308850 Query 214218 TCCA 214221 |||| Sbjct 2308849 TCCA 2308846 >seq37 Length=2935640 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 214094 GGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGA 214153 ||| | ||| |||||||||| | || ||||| | ||||||||| | ||||| || Sbjct 1370461 GGTCAGGAGGTGTTTGGACTGCTTCCTGGTTTGGGGATGTACGCCACGCTGTGGCTCAGG 1370520 Query 214154 GAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAG 214213 ||||| ||| | || || ||| | |||||| ||| || || ||| | ||||| ||| Sbjct 1370521 GAGCATAACCGTGTCTGTGACATCCTGAAAGCAGAACATCCCACCTGGGATGACGAGCAG 1370580 Query 214214 CTGTTCCAGATCACTCGTTTAATCAT 214239 |||||||||| ||| || | ||||| Sbjct 1370581 CTGTTCCAGACCACACGCCTCATCAT 1370606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723071491178400