Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq345 358 9e-94 seq33 105 9e-18 seq38 98.7 1e-15 >seq345 Length=614307 Score = 358 bits (396), Expect = 9e-94 Identities = 1255/1946 (64%), Gaps = 25/1946 (1%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| || ||||||| |||||||| | || | || ||||| || || Sbjct 404496 TTCTTCATCTCCTCGTTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 404437 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || || || || || || | || || || ||||| || || ||||| || | || Sbjct 404436 ACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 404377 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 404376 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATCGGCGCCAGCAGC 404317 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || ||||| | || || | ||| || || || || | ||||| ||||| || Sbjct 404316 AGGCTGTTTCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 404257 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 |||| || | ||| | ||||| || || || || | || | || || Sbjct 404256 TCAGTCGGCGTCTTGTCCCACATGTCGTACTGCAGGATGCCCCTGCTGACGGGCGAGCCT 404197 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTT---CAGCTAGTTCACAACTTGCCTCTAATGCA 69009 | || || || || || || | ||| | || || || || || ||||| | || Sbjct 404196 TCGTACGTCTCGTAGGGGCC---CAGTTTGGCCGCGAGCTCGCAGCTGGCCTCCAGAGCG 404140 Query 69010 CCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAAT 69069 |||| || || || || || |||| | ||||| || || || |||| || || Sbjct 404139 GCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGAGCCTCCGGACTTTCAAAG 404080 Query 69070 GGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTA 69129 || ||| | | | || || || ||||| || ||||| || || || ||||| || || Sbjct 404079 GGGTAACGCATCAAGATGAAGGCGTCTGCTAAACCCTGGACTCCGATTCCGATCGGCCTG 404020 Query 69130 TGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 69189 || | || || || | || || || || | || || || || || || || || || Sbjct 404019 TGGCGTTTGTTGGACATCTCGGCCTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTG 403960 Query 69190 TTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---CGT 69246 || | ||| ||||| ||||| ||| ||||| ||| ||| | || Sbjct 403959 TTCAAGTTTTTGACTATCACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGTGCGC 403900 Query 69247 CCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTA 69306 || | || |||| || || || | ||||| ||||| |||||||| ||||| | Sbjct 403899 TCAGGCGTGACGTACATGTTGAGAGCGATGGATGCCAGATTGCAAACTGCCACCTCGTCG 403840 Query 69307 GAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTT 69366 | | | |||| | | ||| || || | || || || ||||| || |||||||| Sbjct 403839 GCGCTGGTGTATTCCACGACCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAGATTC 403780 Query 69367 TGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCA 69426 ||||| || ||||| |||| || ||||| ||||| | || |||| || || || || Sbjct 403779 TGCTGGTTGCTCTTCCTGTTGCACGCGTCTTTGTACAACATGTACGGCGTTCCGGTCTCC 403720 Query 69427 ATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGC 69486 |||| || || || || | | ||||| | ||| || | || ||| || | Sbjct 403719 GTCTGGGACTCTATGATGGCGTACCAAAGCTGCTGAGCTTTCACCACACGCTTC--ACCC 403662 Query 69487 TTC--TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCA 69544 | | || || || ||| || || ||| || || || || ||||| || || | Sbjct 403661 TCCCTTCCTTCTCGTATGTAGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGA 403602 Query 69545 ATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCA 69604 || ||||| || || |||||||||| ||||| | | | || ||||| |||| Sbjct 403601 GCCCCGGACACTCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACTCGCTTCA 403542 Query 69605 TAAATAGATCGGGAATCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTT 69663 | || || ||||| ||||| || || ||| || || ||||||| ||| | || || || Sbjct 403541 TGAACAGGTCGGGGATCCACAGGGC-ATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTG 403483 Query 69664 CCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATAT 69723 || || || || || || || || || || | | ||| ||||||| || || | || Sbjct 403482 CCAGTGTTCTTCTTCAGCTCTAGGAAGTCAAACACGTCAAAATGCCAAGGCTCCAAGTAC 403423 Query 69724 ATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTA 69783 || || | | | || |||| ||| || || || ||||| | ||| | || ||||| || Sbjct 403422 ATGGCGAAGGCCCCGGGTCTTTTGTTGCCACCTTGATCGACGTAGCGAGCGGTGTTGTTG 403363 Query 69784 TAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTT 69843 || ||||||||||| |||| | || || || || || || || || | || || || Sbjct 403362 TAAACTCTCAGCATGGGAACCAGCCCGTTGGAGTTCCCGTTGGTACCGGCGATGTAGCTC 403303 Query 69844 CCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 || | | | || || | | || || || ||||| || || || || || Sbjct 403302 CCAGTGGATCTGATGCAGCTGACCGCTACGCCAATGCCTCCGGCAGACTTGGAAATGAGG 403243 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 || || | |||| ||||| || || || || ||||| || ||| ||||| || | Sbjct 403242 GCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAG 403183 Query 69964 AAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGA 70023 || ||||| |||| || | | | ||||| || || || | || ||||| |||||| Sbjct 403182 AAGCAGCTGGACAGCTGCGGCCGATTGGTTCCTGCGTTGAAGAGAGTCGGAGAGGCGTGA 403123 Query 70024 GTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGA 70083 |||||||| || || || ||||||||||| || || || || | ||| || || | Sbjct 403122 GTGAACCACTTCTCTGACAGCAGATTGTACGTCTCGATGGCCGCTTCGATGTCGGTCCCG 403063 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 || || || | | || | ||| | ||| ||||| || || || || || || Sbjct 403062 TGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTG 403003 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 ||||||| ||| || || |||||||| || || || || ||||||| || || ||| Sbjct 403002 ATTTTCAGCAGATAGGAGCGCTCCAGAGTCTTGAATCCGAAGAAGTTGTAGGAGAAATCT 402943 Query 70204 CTTTCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACA 70263 || || ||||| || | || || || || || | | ||| || | || Sbjct 402942 CTGTCATAAATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCCAGAACGATGTGCA-GCGT 402884 Query 70264 GTAGGT-GAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTTGAATAA 70319 || | ||||| || || || |||| || ||| || | |||||| | | Sbjct 402883 GTCTTTGGAGATCATGGGGGAGTGGCGTT---GGTTCAAAGGGTTGATGTAGTTGTACAG 402827 Query 70320 ATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTAT 70379 || ||||| || || || || | || || || || ||||| | ||||| | || || Sbjct 402826 GTCCTCCATCACGTCGCTGAACACCTTCTTGGTCTCTTTGTGCAGGTTTGAGACAGCGAT 402767 Query 70380 TCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGC 70439 || || || || || |||||||| || |||| || || || || || || || || Sbjct 402766 CCTCGCAGCGAGGATGGCATAGTCGGGGTGTTTGGTCGTCAGCGTGGCAGCAATCTCAGC 402707 Query 70440 AGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCAT 70499 |||| ||| || | || | || || || ||| |||| || ||||| || || ||||| Sbjct 402706 TGCTAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTATACAGACCTTGGATCACCTTCAT 402647 Query 70500 GGCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT-AATAC 70558 || || | || || | || || | |||||| ||||| || || |||| |||| Sbjct 402646 GGTGATCTGAGCCGGGTCCACAAACTCAGAGTTCAGGCCATAGCA-AAGCTTCTGGATAC 402588 Query 70559 GAGATGTAATTTTATCAAACATAACA 70584 |||| || |||||||| ||||| ||| Sbjct 402587 GAGAGGTGATTTTATCGAACATGACA 402562 >seq33 Length=3077319 Score = 105 bits (116), Expect = 9e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || || || | ||| || || | || || |||||||| || || | ||| | Sbjct 3039104 CCTCATCCCTGCTGATCAGTTCATTGGAGTAGGTCAGGCCAGGCATGAGGCCTCTCTTCT 3039045 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||| | ||||||||||| || || || ||||||||||| || || |||||||| | Sbjct 3039044 TTAGCCAATAGATGGCAGCAAAGGAGCCTGAGAAGAAGATGCCCTCCACGGCTGCAAAAG 3038985 Query 39759 CAACAAGTCTCTCTCC 39774 | ||||||| ||| || Sbjct 3038984 CCACAAGTCGCTCCCC 3038969 >seq38 Length=2821725 Score = 98.7 bits (108), Expect = 1e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 69293 CTGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGA 69352 || ||||||||| | | ||| || | || ||||| || || || || || |||||| Sbjct 1026630 CTCCTACCTCATCATCACTTGTGTACTCTACGATCTCCGTGCACAGGTTGCTGGATTTGA 1026571 Query 69353 TAGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACG 69412 | || ||||| |||||||| || ||||| |||| |||||||||||||| || || | | Sbjct 1026570 TGGTGCCCAGGTTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAG 1026511 Query 69413 GAGTACCAGTTTCAATCTGAGATTCGATAAT 69443 | || || ||||| |||| || ||||| || Sbjct 1026510 GCGTCCCRGTTTCTGTCTGCGACTCGATGAT 1026480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686653055267400