Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq338 93.3 3e-14 >seq338 Length=730526 Score = 93.3 bits (102), Expect = 3e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| || |||||||| | || ||| ||||||||||| ||||||||| ||||| Sbjct 229453 CCAGACCACATCCAGCTCTGAGTTCAGTCCGTCCAGCTTCACAAAGTCATCTTTGTTTGT 229512 Query 77371 AACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGT 77430 || | ||||| | ||||||||||| |||| | ||||||||||| ||||| | || Sbjct 229513 GACGGGACCTCCAGACTTCAGCCTCCAGCTGTTCAGTTTCCAGTTCTTCACCCAACTGGT 229572 Query 77431 CACACC 77436 ||| || Sbjct 229573 CACTCC 229578 Score = 82.4 bits (90), Expect = 6e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 77865 CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGA 77924 |||||||||||||||| |||||| | |||| | |||||||||| | || || || | Sbjct 232344 CTCTGACAAACGCCCAAGCATCTGGTTCTGATACAAACTTCTTGTAAGATGCCGCAGGAA 232403 Query 77925 ATTTGTCTACTTGGCTCTTACATTCATCCC 77954 |||| || || || |||||||||||||||| Sbjct 232404 ATTTATCGACATGACTCTTACATTCATCCC 232433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397311721608925