Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq345 132 4e-26 >seq345 Length=614307 Score = 132 bits (146), Expect = 4e-26 Identities = 292/435 (67%), Gaps = 11/435 (3%) Strand=Plus/Minus Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662 ||||| ||| |||||||||| || ||||| | ||| || ||||||||||| ||| Sbjct 403596 GGACACTCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACTCGCTTCATGAAC 403537 Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722 | || || | ||| | || || || || ||||| ||| | | ||| || | || | Sbjct 403536 AGGTCGGGGATCCACAGGGCATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCAGTG 403477 Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCC 131782 | || |||| | || ||||| || | ||| |||||| || ||||| |||| || Sbjct 403476 TTCTTCTTCAGCTCTAGGAAGTCAAACACGTCAAAATGCCAAGGCTCCAAGTACATGGCG 403417 Query 131783 ATTGCGCC------TTTGCGCTTACCGCCTTGATTAACATGACGAACCATGTTGTTGTAT 131836 | || || |||| || || ||||||| || | ||| | |||||||||| Sbjct 403416 AAGGCCCCGGGTCTTTTG---TTGCCACCTTGATCGACGTAGCGAGCGGTGTTGTTGTAA 403360 Query 131837 ACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCA 131896 || | || |||||| ||| ||||||| ||| || ||||| | |||||||| ||| Sbjct 403359 ACTCTCAGCATGGGAACCAGCCCGTTGGAGTTCCCGTTGGTACCGGCGATGTAGCTCCCA 403300 Query 131897 TTGGCTCTGATTTTG-TGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGC 131955 ||| |||||| | ||| || | | ||||| |||||| | | || || || || || Sbjct 403299 GTGGATCTGATGCAGCTGACCGCT-ACGCCAATGCCTCCGGCAGACTTGGAAATGAGGGC 403241 Query 131956 GCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAA 132015 ||| | | || |||| ||||| ||||| | |||||| | ||| ||| || || Sbjct 403240 GCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAA 403181 Query 132016 GCAAGAGGACAACTG 132030 ||| ||||| ||| Sbjct 403180 GCAGCTGGACAGCTG 403166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424780146820920