Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2653 89.7 2e-12 seq558 89.7 2e-12 >seq2653 Length=13515 Score = 89.7 bits (98), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817 || |||||||||||||||||||| ||||| || || |||| |||||||||||| || ||| Sbjct 11537 TTCGCCTCCATCTTCTGGTTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCAGCAAC 11596 Query 443818 GAACTGATCAGTCGGGACGAGG 443839 || || ||||| | ||||||| Sbjct 11597 GAGCTCATCAGCAGAGACGAGG 11618 >seq558 Length=349536 Score = 89.7 bits (98), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 443758 TTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAAC 443817 || |||||||||||||||||||| ||||| || || |||| |||||||||||| || ||| Sbjct 123835 TTCGCCTCCATCTTCTGGTTGAAGAAGCGAGGCCTGATGCCCGGTCTGACCTTCAGCAAC 123776 Query 443818 GAACTGATCAGTCGGGACGAGG 443839 || || ||||| | ||||||| Sbjct 123775 GAGCTCATCAGCAGAGACGAGG 123754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587729858719325