Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq345 165 1e-35 seq38 91.5 2e-13 >seq345 Length=614307 Score = 165 bits (182), Expect = 1e-35 Identities = 959/1511 (63%), Gaps = 80/1511 (5%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| || || |||||| Sbjct 404494 CTTCATCTCCTCGTTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTGAC 404435 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || ||||| || | |||| || | ||||||||| | ||||| | || | Sbjct 404434 GATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGAT 404375 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || |||||||| || || ||||| || |||| || || Sbjct 404374 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATCGGCGCCAGCAGCAG 404315 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTA--GTTG 110851 ||||| | | || | || ||| ||||| || | | |||||| | | | Sbjct 404314 GCTGTTTCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTC 404255 Query 110852 AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCA--CCCCTTGGGACGCGGGAGAAC 110909 || | || || | |||||||||| |||| || | ||||| |||| | ||| | Sbjct 404254 AG-TCGGCGTCTTGT-CCCACATGTCGTACTGCAGGATGCCCCTGCTGACGGGCGAG--C 404199 Query 110910 CCTCAAAGGTTTCATAGGAACC---TTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGG 110966 | || | || || |||| || || ||| || | || ||||| |||||||| | Sbjct 404198 CTTCGTACGTCTCGTAGGGGCCCAGTTTGGCC---GCGAGCTCGCAGCTGGCCTCCAGAG 404142 Query 110967 ATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAAT--C 111024 |||| || ||||| ||||| || | || | | || || || | || | | Sbjct 404141 CGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGAGCCTC--CGGACTTTC 404084 Query 111025 AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 111084 ||| | ||| || ||| || || | || || | ||| || || || | || || || Sbjct 404083 AAAGGGGTAACGCATCAAGATGAAGGCGTCTGCTAAACCCTGGACTCCGATTCCGATCGG 404024 Query 111085 TCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAAT 111141 ||||| || | || ||| | | | | ||| || || || | || | ||||| Sbjct 404023 CCTGTGGCGTTTGTTGGACAT---CTCGGCCTCGGGGACCGGGTAGTAGTTGATTTCAAT 403967 Query 111142 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA--TGA-AGTTTTTCATAATC 111198 || ||| | |||||| || ||| | || | || || ||||||| | | || Sbjct 403966 GATCTTGTTCAAGTTTTTG---ACTATCACTTTGGTCACAGATGCCAGTTTTTTAAAGTC 403910 Query 111199 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 | ||||||| ||| |||| ||| | || ||||| ||||||| ||||||||| Sbjct 403909 ATAAGTGCG---CTCAGGCGTGACGTACATGTTGAGAGCGATGGATGCCAGATTGCAAAC 403853 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAAT 111318 ||| ||| || ||||| || | | || || || |||||| | ||| || Sbjct 403852 TGCCACCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCACAAGTTGCTGCACTTGAT 403793 Query 111319 CGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 || |||| ||||| ||||| |||||| |||||||||| || ||||| | |||||| || Sbjct 403792 GGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCTTTGTACAACATGTACGG 403733 Query 111379 CGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACATCGGCGGCTGGTACAAT 111438 ||| || ||||||||||| || | | || || | ||||| | ||| || | Sbjct 403732 CGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGTACCAAAGCTGCTGAGCTTTCACCAC 403673 Query 111439 GGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCAC 111498 || ||| || ||| |||||| | ||||| || ||||||||||| ||| | Sbjct 403672 ACGCTTCACCCTCCCTTCCTTCTCGTATGTAGTGTACAGCTTCTCAAACTCCTC-CCCCC 403614 Query 111499 CGC-GTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTT--C 111555 || ||| ||| || || || || ||||| | |||||||| | || || Sbjct 403613 AGCACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGAGACCA--GTCCTGGTTGCT 403556 Query 111556 CTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCG 111615 ||| || ||||||||||| ||||| || |||||||||| | || || ||||| | Sbjct 403555 CTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAAGGTCTCT-----G 403501 Query 111616 AGCCTCTTCGTCACCTTGGTTGAGTCGT-----AACTCAAGGAACTCCATGATATCCGCG 111670 |||| | | ||||| | || | | ||| ||||| || | | || Sbjct 403500 GCTCTCTGCTCCTCCTTGCCAGTGTTCTTCTTCAGCTCTAGGAAGTCAAACACGTCAAAA 403441 Query 111671 TGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTAC 111726 ||||| ||||| | || | |||| | || |||| | | ||| |||||| || Sbjct 403440 TGCCAAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTGTTG-CCACCTTGATCGAC 403382 Query 111727 ATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATT 111786 ||||| || ||| ||| | || | ||||| |||| | || | || | || || Sbjct 403381 GTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGTTGGAGTTCCCGTT 403322 Query 111787 TGTCCCCCGAATACGAGATTTATTGGCTCTCA---CATC--ATGGATGTG-----CATCC 111836 || || | ||| || |||| || ||| ||| | || | | Sbjct 403321 GGTACC-------GGCGATGTA---GCTCCCAGTGGATCTGATGCAGCTGACCGCTACGC 403272 Query 111837 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 111896 |||| || || || |||| || || | || |||| | | || || | ||||| || | Sbjct 403271 CAATGCCTCCGGCAGACTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCTT 403212 Query 111897 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTC--TTGGTGT 111954 ||| ||| || || |||||| | |||||| ||||||| |||||| | ||| || Sbjct 403211 CGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGCGGCCGATTG--GT 403154 Query 111955 ACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGT 112013 || || |||||||| || || | |||||| ||||| || | | |||| | | || Sbjct 403153 TCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAAC-CACTTCTCTGACAGCAGATTGT 403095 Query 112014 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACA 112073 | ||||| | | | | || ||||| ||||||||| || | | |||| ||||| || Sbjct 403094 ACGTCTCGATGGCCGCTTCGATGTCGGTCCCGTGGATCCCAACAGACACCCTCATGAGCA 403035 Query 112074 TGTACTGTGGG 112084 ||| ||| ||| Sbjct 403034 TGTGCTGCGGG 403024 >seq38 Length=2821725 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| | | ||||||||||| || || || || | |||| || || || || Sbjct 1026623 CTCATCATCACTTGTGTACTCTACGATCTCCGTGCACAGGTTGCTGGATTTGATGGTGCC 1026564 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || || | ||||| |||||| ||||||| || ||||||||||||||||| |||||||| Sbjct 1026563 CAGGTTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTCCC 1026504 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA 111417 || || ||||| || | || || || | ||| Sbjct 1026503 RGTTTCTGTCTGCGACTCGATGATGGCGTACCA 1026471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627798175836000