Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq345 100 4e-16 seq2653 96.9 4e-15 seq558 93.3 5e-14 >seq345 Length=614307 Score = 100 bits (110), Expect = 4e-16 Identities = 215/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Minus Query 118767 TCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 118826 |||||||||||||| | ||| |||||||||| |||| || || ||| |||| Sbjct 403818 TCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTG 403759 Query 118827 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 118886 ||||| || ||||| | |||||| ||||| || |||||||| ||||||| | || || Sbjct 403758 CACGCGTCTTTGTACAACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATGGCG 403699 Query 118887 TTCCAGACATCGGCAGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGT 118945 | ||| | | |||| || || || || | | ||| || | |||||| | || Sbjct 403698 TACCAAAGCTGCTGAGCTTTCACCACACGC-TTCACCCTCCCTTCCTTCTCGTATGTAGT 403640 Query 118946 GTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCA 119005 ||| || |||||||| || ||| | ||| |||||| || || | || || Sbjct 403639 GTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAGCCCCGGACACTCGTTGGGACA 403580 Query 119006 GAAGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAG 119063 | |||||||| | || | ||| || ||||||||||| ||||| |||||||| Sbjct 403579 CATCAGAGACCA--GTCCTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCAC 403522 Query 119064 AGCGCCGAGAAGAGATC 119080 || || |||| || || Sbjct 403521 AGGGCATAGAAAAGGTC 403505 >seq2653 Length=13515 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||| |||||| ||||| || || ||||||| Sbjct 11618 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCGCTTCT 11559 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 |||||||||| || | || || || ||||||||||||||||||||| ||||||| Sbjct 11558 TCAACCAGAAGATGGAGGCGAACGAACCGGAGAAGAAGATCCCCTCCACAGCAGCGAACG 11499 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 11498 CCACCAAACGCTC 11486 >seq558 Length=349536 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||| |||||| ||||| || || ||||||| Sbjct 123754 CCTCGTCTCTGCTGATGAGCTCGTTGCTGAAGGTCAGACCGGGCATCAGGCCTCGCTTCT 123813 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 |||||||||| || | || || || ||||||||||||||||||||| ||||||| Sbjct 123814 TCAACCAGAAGATGGAGGCGAACGAACCGGAGAAGAAGATCCCCTCCACAGCAGCGAACG 123873 Query 130155 C 130155 | Sbjct 123874 C 123874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618204948844600