Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq345 109 6e-19 seq33 86.0 7e-12 >seq345 Length=614307 Score = 109 bits (120), Expect = 6e-19 Identities = 947/1507 (63%), Gaps = 72/1507 (5%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||| | ||| | | || || || ||| ||||| || | | Sbjct 403024 CCCGCAGCACATGCTCATGAGGGTGTCTGTTGGGATCCACGGGACCGACATCGAAGCGGC 403083 Query 104281 CTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | | ||||| ||| | | |||| | | || ||||| |||||| | || || |||| Sbjct 403084 CATCGAGACGTACAATCTGCTGTCAGAGAAGTG-GTTCACTCACGCCTCTCCGACTCTCT 403142 Query 104340 TCAATGCTGGTACACCAA--GACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGA 104397 |||| || || || ||| | || || ||||||| |||||| | |||||| || || Sbjct 403143 TCAACGCAGGAAC--CAATCGGCCGCAGCTGTCCAGCTGCTTCTTGCTCGCCATGAAAGA 403200 Query 104398 GGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGC 104457 ||| ||| | || ||||| | || || | | |||| || | || || |||| || Sbjct 403201 CGACAGCATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAGTCTGC 403260 Query 104458 TGGGGGTATTGGGATG-----CACATCCAT--GATG---TGAGAGCCAATAAATCTCGTA 104507 || || ||||| | || | ||| ||| || |||| || ||| | Sbjct 403261 CGGAGGCATTGGCGTAGCGGTCAGCTGCATCAGATCCACTGGGAGC---TACATCGCC-- 403315 Query 104508 TTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCA 104567 || || || || | || | || | |||| ||||| | || | ||| || Sbjct 403316 -----GGTACCAACGGGAACTCCAACGGGCTGGTTCCCATGCTGAGAGTTTACAACAACA 403370 Query 104568 CAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTT 104623 | || ||||| || |||||| ||| | | |||| || | |||| | || | Sbjct 403371 CCGCTCGCTACGTCGATCAAGGTGG-CAACAAAAGACCCGGGGCCTTCGCCATGTACTTG 403429 Query 104624 GAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAG 104683 ||||| ||||| || | | || ||||| ||| || ||| || | ||| Sbjct 403430 GAGCCTTGGCATTTTGACGTGTTTGACTTCCTAGAGCTGAAGAAGAACACTGGCAAGGAG 403489 Query 104684 GAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGA 104743 ||| | | | | || || |||| || || ||||| || || || ||||||||| || Sbjct 403490 GAGCAGAGAGCCAGAGACCTTTTCTATGCCCTGTGGATCCCCGACCTGTTCATGAAGCGA 403549 Query 104744 GTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCC 104800 || |||||| | | |||||||| | ||||| || || || || ||| | Sbjct 403550 GT---GGAGAGCAACCAGGACTGGTCTCTGATGTGTCCCAACGAGTGTCCGGGGCTCGAC 403606 Query 104801 GA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGC 104859 || ||| | ||| ||||||||||| || ||||| | |||||| | ||||| ||| Sbjct 403607 GAGTGCTGGGGG-GAGGAGTTTGAGAAGCTGTACACTACATACGAGAAGGAAGGGAGGGT 403665 Query 104860 GACTGCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGA 104918 || ||| |||| |||| | | ||| | || || | |||| || || |||| Sbjct 403666 GAA-GCGTGTGGTGAAAGCTCAGCAGCTTTGGTACGCCATCATAGAGTCCCAGACGGAGA 403724 Query 104919 CTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATT 104978 | || || || |||||| | ||||||||||| || ||| ||||| || || ||||| Sbjct 403725 CCGGAACGCCGTACATGTTGTACAAAGACGCGTGCAACAGGAAGAGCAACCAGCAGAATC 403784 Query 104979 TGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATG 105038 |||| |||||| | ||| | || || || || |||||| || | || | Sbjct 403785 TGGGCACCATCAAGTGCAGCAACTTGTGCACGGAGGTCGTGGAATACACCAGCGCCGACG 403844 Query 105039 AGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAA 105098 || ||| || || || || ||||| ||||||||| || ||| || || ||| Sbjct 403845 AGGTGGCAGTTTGCAATCTGGCATCCATCGCTCTCAACATGTACGTCACGCCTGAG---C 403901 Query 105099 AGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACA 105158 || | ||| | | ||||||| || || ||| | ||||||| | |||| Sbjct 403902 GCACTTATGACTTTAAAAAACTGGCATCTGTGACCAAAGTGATAGTCAAAAACTTGAACA 403961 Query 105159 GAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGAC 105215 | ||||| | || | ||||| || ||| || | || || | | | Sbjct 403962 AGATCATTGAAATCAACTACTACCCGGTCCCCGAG---GCCGAGATGTCCAACAAACGCC 404018 Query 105216 ACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGT-CGCCAC 105274 || | || || || |||| || |||||| | || || | |||| |||| | || || Sbjct 404019 ACAGGCCGATCGGAATCGGAGTCCAGGGTTTAGCAGACGCCTTCA-TCTTGATGCGTTAC 404077 Query 105275 GCATTTG--ATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATC 105332 | |||| | |||| || || || |||| | || ||||||||||| || Sbjct 404078 CCCTTTGAAAGTCCG--GAGGCTCAGCTGCTCAACATCCAGATGTTTGAGACCATCTACT 404135 Query 105333 ACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAG--AGGTTGATGGTCCATATGAAACCTT 105390 |||||||||| ||||| || | ||| | || | | || || || || || || | Sbjct 404136 ACGCCGCTCTGGAGGCCAGCTGCGAGCTCGCGGCCAAACTG--GGCCCCTACGAGACGTA 404193 Query 105391 TGAGGGTTCTCCAGCTTCACAAGGGG--TGCTTCAATTTGATATGTGGG--AAGGTG-AG 105445 || || || || | ||| ||||| | || || | || ||||||| ||| | | Sbjct 404194 CGAAGGCTCGCC--CGTCAGCAGGGGCATCCTGCAGTACGACATGTGGGACAAGACGCCG 404251 Query 105446 ACCAAGCTTCACTACGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504 || | || | |||| ||||||| || ||||| ||| || | || | | Sbjct 404252 ACTGACCT---GTGGGACT-GGAAGCTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAG 404307 Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564 ||||| || || |||| || ||||| || || |||||||| || ||| |||| || || Sbjct 404308 AAACAGCCTGCTGCTGGCGCCGATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAA 404367 Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTT 105624 || | | | || | ||||| | |||||||| | || |||| | |||||||| Sbjct 404368 CGAGTCCATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTT 404427 Query 105625 TGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA 105684 ||| |||||| ||||| | | ||||| | |||| || || ||| | |||| Sbjct 404428 CCAGATCGTCAACCCTCATCTGCTCAAAGACCTGACGGAGAGGGGGCTGTGGAACGAGGA 404487 Query 105685 TATGAAG 105691 |||||| Sbjct 404488 GATGAAG 404494 >seq33 Length=3077319 Score = 86.0 bits (94), Expect = 7e-12 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGC-GC 94862 |||||||| | || ||||| || ||||| ||||||||||| || ||||| ||| || Sbjct 3038972 GAGCGACTTGTGGCTTTTGCAGCCGTGGAGGGCATCTTCTTCTCAGGCTCCTT-TGCTGC 3039030 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || |||||||| |||||| |||| |||||||| || || || |||||| || || || Sbjct 3039031 CATCTATTGGCTAAAGAAGAGAGGCCTCATGCCTGGCCTGACCTACTCCAATGAACTGAT 3039090 Query 94923 C 94923 | Sbjct 3039091 C 3039091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583043644713400