Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq345 302 5e-77 seq558 98.7 1e-15 seq38 93.3 5e-14 seq33 93.3 5e-14 seq2653 84.2 2e-11 >seq345 Length=614307 Score = 302 bits (334), Expect = 5e-77 Identities = 956/1451 (66%), Gaps = 73/1451 (5%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| |||| ||| || ||| |||||||||| | ||||||| ||||| | ||| Sbjct 404428 GAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCGATGGACTC 404369 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| |||| |||||||||||| || || || ||||| || || | ||| || || Sbjct 404368 GTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATCGGCGCCAGCAGCAGGCTGTT 404309 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680 | | || ||| | ||||| |||| || | |||||| | ||| ||| Sbjct 404308 TCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGGTCAGTCGG 404249 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCG--GACGCCGGCGACCCCTTGAAC 78738 || | |||||||||| || ||||| ||| | |||| ||||| || | | || Sbjct 404248 CGTCTTGTCCCACATGTCGTACTGCAGGATGCCCCTGCTGACG--GGCGAGCCTTCGTAC 404191 Query 78739 GTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCAT---GACTCGAGCAGGGCCGCGTGG 78795 |||||||| | ||| | ||||| ||||| | ||| ||| || |||| | Sbjct 404190 GTCTCGTAGGGGCCCAGTTTGGCCGCGAGCTCGCAGCTGGCCTC---CAGAGCGGCGTAG 404134 Query 78796 TACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTT-GGTCTCGTCGAACGA--A 78852 || | | ||| || || |||||||| | |||| || || || || | | Sbjct 404133 TAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGAGCCTCCGGACTT-TCAAAGGGGTA 404075 Query 78853 AGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGG 78912 | || | || |||||| | || || | |||||||| ||||| ||||||| | |||| Sbjct 404074 ACGC--ATCAAGATGAAGGCGTCTGCTAAACCCTGGACTCCGATTCCGATCGGCCTGTGG 404017 Query 78913 CGCATGTTGCTCTT-TCGGGCCGCCTCGGT---CGGGTAAAAGTTCCGATCGATGACGCG 78968 || ||||| | | |||| |||||| |||||| |||| || |||| Sbjct 404016 CGTTTGTTGGACATCTCGG----CCTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTT 403961 Query 78969 GTTCAGGTTACGCGTGACGACCCGA---GTCACCTCGTACAATTTGGCGAAATCAAAA-T 79024 ||||| ||| |||| | | ||||| || ||| || ||| || | Sbjct 403960 GTTCAAGTTTT---TGACTATCACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGT 403904 Query 79025 GATTTCCTT--TGATGAAAGTCGGTAGGCACAGCGATG----CCAGGTTGCACACGGCCG 79078 | || ||| | | | || | | ||||||| |||| ||||| || ||| Sbjct 403903 GCGCTCAGGCGTGACGTACAT--GTTG--AGAGCGATGGATGCCAGATTGCAAACTGCCA 403848 Query 79079 TCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGC 79138 |||||| | ||| | || | || || |||||||| || |||||||||||| Sbjct 403847 CCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCACAAGTTGCTGCACTTGATGGTGC 403788 Query 79139 CGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCC 79198 | | |||| ||||||||||||| ||| || ||||| ||||| ||||||||||||| | Sbjct 403787 CCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCTTTGTACAACATGTACGGCGTTC 403728 Query 79199 CGGTCTCAACCTG--ACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTT 79256 ||||||| ||| ||||| | | | ||| ||| | | | | || || || Sbjct 403727 CGGTCTCCGTCTGGGACTCT--ATGATGGCGTACCAAAGCTGCTGAGCTTTCACCACACG 403670 Query 79257 CTTGTACCGACCCTG--TGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAG 79314 ||| ||| |||| | | |||| || ||||| || | || ||||||| || Sbjct 403669 CTTC-ACCCTCCCTTCCTTCT-CGTATGTAGTGTACAGCTTCTCAAACTCCTCCCCCCAG 403612 Query 79315 ACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCA 79374 ||| || ||||| ||||||| || |||||||| |||||||| || |||| Sbjct 403611 CACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCC 403552 Query 79375 ACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATC 79434 || || |||||| ||||| |||||||||||||| ||| ||||| | | | | | Sbjct 403551 ACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCATAGAAAAGGTCTCTGGCTCTCTGC 403492 Query 79435 TCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGC 79494 ||||| | ||| |||| |||||| || ||||| | | ||| ||||| ||| Sbjct 403491 TCCTCCTTGCCAGTGTTCTTCTTCAGCTCTAGGAAGTCAAACACGTCAAAATGCCAAGGC 403432 Query 79495 TCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCC 79554 |||| || |||||||| | || | ||| ||| || || | |||||| || || Sbjct 403431 TCCAAGTACATGGCGAAGGCCCCGGGTCTTTTGTTGCCACCTTGATCGACGTAGCGAGCG 403372 Query 79555 GTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTG 79614 ||||||||| |||||| |||||||| || | |||| || | ||||| || ||| | Sbjct 403371 GTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGTTGGAGTTCCCGTTGGTACCGGCG 403312 Query 79615 ATTCGTGTACCGCTCGCCCGAATGTTCGA-GCAGTGGATT------CCGATGCCCCCGGA 79667 || ||| |||| || | | || |||| || || ||||| |||| Sbjct 403311 AT----GTA--GCTC-CCAGTGGATCTGATGCAGCTGACCGCTACGCCAATGCCTCCGGC 403259 Query 79668 CCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTC 79727 ||||||| ||| | ||||||| ||| || || ||||||||||| ||||| |||||| Sbjct 403258 AGACTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTC 403199 Query 79728 CTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAG 79787 ||||| |||| || ||||||||| |||| ||| || || || || ||||||||||| Sbjct 403198 TTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGCGGCCGATTGGTTCCTGCGTTGAAGAG 403139 Query 79788 GGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCG 79847 ||||| | ||||| ||||| |||| | || ||||| ||||||||| || | || Sbjct 403138 AGTCGGAGAGGCGTGAGTGAACCACTTCTCTGACAGCAGATTGTACGTCTCGATGGC-CG 403080 Query 79848 C-GGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG-GGGCGTC 79905 | || |||| |||||||| || || | || | ||||| | || ||| ||||| | Sbjct 403079 CTTCGATGTCGGTCCCGTGGATCCCAACAGACACCCTCATGAGCATGTGCTGCGGGCG-C 403021 Query 79906 TCGCCGACATT 79916 ||| | || || Sbjct 403020 TCGGCCACCTT 403010 Score = 208 bits (230), Expect = 8e-49 Identities = 848/1329 (64%), Gaps = 37/1329 (3%) Strand=Plus/Plus Query 19165 CGAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAA 19224 |||||| ||| | ||| || |||||| ||||| ||||| | ||||| || ||||| Sbjct 403087 CGAGACGTACAATCTGCTGTCAGAGAAGTGGTTCACTCACGCCTCTCCGACTCTCTTCAA 403146 Query 19225 CGCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAG 19284 ||| || || || |||||| |||| ||||| ||| | | || ||||| || ||||| Sbjct 403147 CGCAGGAACCAATCGGCCGCAGCTGTCCAGCTGCTTCTTGCTCGCCATGAAAGACGACAG 403206 Query 19285 CATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGG 19344 ||| || ||||||||||| || || ||| ||||||| | ||| ||||||| |||| || Sbjct 403207 CATCGAAGGCATCTACGACACCCTGAAGCAGTGCGCCCTCATTTCCAAGTCTGCCGGAGG 403266 Query 19345 TATCGG------GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGAC 19398 || || | || |||| ||| | || | ||| | ||| || || Sbjct 403267 CATTGGCGTAGCGGTCAGCTGC------ATCAGATCCACTGGGAGCTACATCGCCGGTAC 403320 Query 19399 GAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTA 19458 ||||| || |||| | || || ||||| | || | ||||||||| || | || Sbjct 403321 CAACGGGAACTCCAACGGGCTGGTTCCCATGCTGAGAGTTTACAACAACACCGCTCGCTA 403380 Query 19459 CGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCA 19518 |||| | || || ||| |||| | || | |||||||| ||| | ||||| ||||| Sbjct 403381 CGTCGATCAAGGTGGCAACAAAAGACCCGGGGCCTTCGCCATGTACTTGGAGCCTTGGCA 403440 Query 19519 CGCGGACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTG 19578 ||||| | || ||||| || ||| |||| || | |||||| | | Sbjct 403441 TTTTGACGTGTTTGACTTCCTAGAGCTGAAGAAGAACACTGGCAAGGAGGAGCAGAGAGC 403500 Query 19579 TCGCGACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGA 19638 | ||||| ||| ||| ||||||| || ||||| |||||| || || |||| | Sbjct 403501 CAGAGACCTTTTCTATGCCCTGTGGATCCCCGACCTGTTCATGAAGCGAGTGGAGAGCAA 403560 Query 19639 CGAAGAATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 | | || ||| |||||||| || |||| || || || || ||| || || || Sbjct 403561 CCAGGACTGGTCTCTGATGTGTCCCAACGAGTGTCCGGGGCTCGACGAGTGCTGGGGGGA 403620 Query 19699 GGCGTTCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCG 19758 || ||| | || ||||| || |||| | || || | ||| ||||| Sbjct 403621 GGAGTTTGAGAAGCTGTACACTACATACGAGAAGGAAGGGAGGGTGAAGCGTGTGGTGAA 403680 Query 19759 GGCCCGGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACAT 19818 || | | | | ||| || | || | | |||| |||||||| || |||||||| Sbjct 403681 AGCTCAGCAGCTTTGGTACGCCATCATAGAGTCCCAGACGGAGACCGGAACGCCGTACAT 403740 Query 19819 GTGCTACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTC 19878 || ||||| ||||| ||| ||| || ||| |||| | ||| | ||||||| Sbjct 403741 GTTGTACAAAGACGCGTGCAACAGGAAGAGCAACCAGCAGAATCTGGGCACCATCAAGTG 403800 Query 19879 GTCCAACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAA 19938 |||| |||| || || || |||| ||| | |||||| || || || || Sbjct 403801 CAGCAACTTGTGCACGGAGGTCGTGGAATACACCAGCGCCGACGAGGTGGCAGTTTGCAA 403860 Query 19939 TCTGGCGTCCCTGTGCCTGCCGACTTTCGTCAAGGCCT----CCTCCTTCGACTTTGCCA 19994 |||||| ||| | || | | |||| | |||| | | | |||||| | Sbjct 403861 TCTGGCATCCATCGCTCTCAACATGTACGTC-ACGCCTGAGCGCACTTATGACTTTAAAA 403919 Query 19995 AATTGTACGAGGTGACCCGGGTCGTCACGCGTAATC-TGAATCGCGTCATCGATCGGAAC 20053 || || |||||| || | | | || | |||| |||| || ||| Sbjct 403920 AACTGGCATCTGTGACCAAAGT-GATAGTCAAAAACTTGAACAAGATCATTGAAATCAAC 403978 Query 20054 TTTTACCCG---ACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATC 20110 | |||||| ||||||| | | | ||| || | |||||| ||||||||| ||| Sbjct 403979 TACTACCCGGTCCCCGAGGCCGAG---ATGTCCAACAAACGCCACAGGCCGATCGGAATC 404035 Query 20111 GGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAG 20170 || |||||||| | || |||| ||||| || | | | | || || ||| || Sbjct 404036 GGAGTCCAGGGTTTAGCAGACGCCTTCATCTTGATGCGTTACCCCTTTGAAAGTCCGGAG 404095 Query 20171 GCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCG 20230 || | |||||||| || || ||| || | ||| |||| || || || Sbjct 404096 GCTCAGCTGCTCAACATCCAGATGTTTGAGACCATCTACTACGCCGCTCTGGAGGCCAGC 404155 Query 20231 TGCGAACTC---GCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCC 20287 ||||| ||| |||||| | ||||| |||||||||| | | || ||||||| | Sbjct 404156 TGCGAGCTCGCGGCCAAACTG---GGCCCCTACGAGACGTACGAAGGCTCGCCCGTCAGC 404212 Query 20288 GAGGGTATCCTCCAGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGGAGC-----G 20342 ||| ||||| ||| |||||||||| | || || ||| | ||| | | Sbjct 404213 AGGGGCATCCTGCAGTACGACATGTGGGACAAGACGCCGACTGACCTGTGGGACTGGAAG 404272 Query 20343 C-CCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATG 20401 | || |||| ||||| | ||||| | | ||| |||| | ||||| ||| Sbjct 404273 CTGCTGAAGGAGAAGATCGCCAAGCACGGCGTGAGAAACAGCCTGCTGCTGGCGCCGATG 404332 Query 20402 CCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACC 20461 || || || || |||||||||||| |||| ||||||||| | ||||| ||||||| | | Sbjct 404333 CCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCGTACACCAGC 404392 Query 20462 AACATCTAC 20470 ||||||||| Sbjct 404393 AACATCTAC 404401 Score = 82.4 bits (90), Expect = 8e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 78221 CCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGGTTCTCC-ATG 78279 ||| |||||| ||||| | |||||| || | ||| ||| || | | || ||| | ||| Sbjct 404807 CCTGCTTCCAGCCGTAGAAGTGCATGCTGGTCAGTTTG-CCGTAGTTTGGCTCTGCGATG 404749 Query 78280 AAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATG 78339 |||||| ||||||||| |||||||||||| || || |||||||| ||||| | | Sbjct 404748 TGGATGTTCAGCGACTGGCTCTGGTCGATGTAGGCGCCACGGTCGGCAGCCATCTTTAGC 404689 Query 78340 ACCGACTTTTGCGGAATCTCCCAGATGGT 78368 || | ||| || | || ||||| | ||| Sbjct 404688 ACAGTCTTCTGGGAGATTTCCCAAACGGT 404660 >seq558 Length=349536 Score = 98.7 bits (108), Expect = 1e-15 Identities = 75/89 (84%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| |||||| |||| || |||||| Sbjct 123296 ATCTACCGGGTGGAGAACCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACC 123237 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||||||||||||||| || Sbjct 123236 AACTTCTTTGAGAAGCGGGTCGGGGAGTA 123208 >seq38 Length=2821725 Score = 93.3 bits (102), Expect = 5e-14 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| || ||||||| || || ||||||||||| | ||| | ||||||||| Sbjct 1026605 CTCTACGATCTCCGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTTTGCTGGTTGCT 1026546 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| ||| ||||||||||||||| |||||| |||||||| || || Sbjct 1026545 CTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTCCCRGTTTC 1026498 >seq33 Length=3077319 Score = 93.3 bits (102), Expect = 5e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||||||| |||||| || ||||||||||| ||||| || ||| || | ||||| Sbjct 3038984 GCTTTTGCAGCCGTGGAGGGCATCTTCTTCTCAGGCTCCTTTGCTGCCATCTATTGGCTA 3039043 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | ||||||||||| ||||||| | |||||| || ||||| | |||| ||| Sbjct 3039044 AAGAAGAGAGGCCTCATGCCTGGCCTGACCTACTCCAATGAACTGATCAGCAGGGATGAG 3039103 Query 60111 G 60111 | Sbjct 3039104 G 3039104 >seq2653 Length=13515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||| || |||| ||||||| |||||| |||| || ||||||||||||||||||||| Sbjct 12247 AACCCCTTTGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAG 12306 Query 60405 CGGGTCGGGGATTA 60418 |||||||||| || Sbjct 12307 AGGGTCGGGGAGTA 12320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548320577360400