Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq345 187 3e-42 seq38 102 9e-17 seq569 100 3e-16 seq558 87.8 2e-12 seq33 87.8 2e-12 >seq345 Length=614307 Score = 187 bits (206), Expect = 3e-42 Identities = 470/706 (67%), Gaps = 10/706 (1%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || || || |||||||| || || |||| || ||| || Sbjct 403112 AAGTGGTTCACTCACGCCTCTCCGACTCTCTTCAACGCAGGAACCAATCGGCCGCAGCTG 403171 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || ||||||||| || | || ||||| || ||| ||||| ||||||||||| || || Sbjct 403172 TCCAGCTGCTTCTTGCTCGCCATGAAAGACGACAGCATCGAAGGCATCTACGACACCCTG 403231 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCG--GTATC-CACTGCTCGAAC 53443 ||| |||| |||| ||| ||||||| | || || || | ||| | | ||| | Sbjct 403232 AAGCAGTGCGCCCTCATTTCCAAGTCTGCCGGAGGCATTGGCGTAGCGGTCAGCT---GC 403288 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 || | | | || | ||| || || ||||| | || | || | || || Sbjct 403289 ATCAGATCCACTGGGAGCTACATCGCCGGTACCAACGGGAACTCCAACGGGCTGGTTCCC 403348 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | || | ||||||||| || || |||||| | || ||||| || | Sbjct 403349 ATGCTGAGAGTTTACAACAACACCGCTCGCTACGTCGATCAAGGTGGCAACAAAAGACCC 403408 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 ||| | |||||||| ||| | ||||| ||||| ||| | | || || || |||||| Sbjct 403409 GGGGCCTTCGCCATGTACTTGGAGCCTTGGCATTTTGACGTGTTTGACTTCCTAGAGCTG 403468 Query 53624 CGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATT 53683 ||| || | || ||| | | | | ||||| || || |||||||| Sbjct 403469 AAGAAGAACACTGGCAAGGAGGAGCAGAGAGCCAGAGACCTTTTCTATGCCCTGTGGATC 403528 Query 53684 CCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAAC 53743 || ||||| |||||| | ||||||| || |||| |||| |||||||| || ||| Sbjct 403529 CCCGACCTGTTCATGAAGCGAGTGGAGAGCAACCAGGACTGGTCTCTGATGTGTCCCAAC 403588 Query 53744 GAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTA 53802 ||||| || || ||| | | ||| || || ||||||||| | || |||| || || Sbjct 403589 GAGTGTCCGGGGCTCGACGAGTG-CTGGGGGGAGGAGTTTGAGAAGCTGTACACTACATA 403647 Query 53803 CG-CAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCC 53861 || | |||| | | ||| ||| || || | || | ||| | || ||| Sbjct 403648 CGAGAAGGAAGGGAGGGT-GAAGCGTGTGGTGAAAGCTCAGCAGCTTTGGTACGCCATCA 403706 Query 53862 TCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGA 53921 | || |||| |||||| |||||||||||||||| ||||| || || |||| || Sbjct 403707 TAGAGTCCCAGACGGAGACCGGAACGCCGTACATGTTGTACAAAGACGCGTGCAACAGGA 403766 Query 53922 AGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 ||||||||||| |||| | ||| |||||| | |||||||| || Sbjct 403767 AGAGCAACCAGCAGAATCTGGGCACCATCAAGTGCAGCAACTTGTG 403812 Score = 96.9 bits (106), Expect = 4e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| ||||||| ||||| || ||||| || || |||||| |||||||||||||| | Sbjct 404314 CCTGCTGCTGGCGCCGATGCCCACGGCGTCCACCGCCCAGATCCTGGGCAACAACGAGTC 404373 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCAT 55611 ||||| ||||||| | |||||||||| ||| || ||| | || ||||| || Sbjct 404374 CATCGAGGCGTACACCAGCAACATCTACACCCGCAGGGTCCTCTCCGGAGAGTTCCAGAT 404433 Query 55612 GATCAACAAGCACCTCGTCAAGGACCTG 55639 ||||| || || |||| |||||| Sbjct 404434 CGTCAACCCTCATCTGCTCAAAGACCTG 404461 >seq38 Length=2821725 Score = 102 bits (112), Expect = 9e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 |||||| |||| || ||||| || || || |||||||||||| |||||||||||||| | Sbjct 1027415 CCTGCTGTTGGCCCCGATGCCCACGGCCTCCACGGCTCAGATCCTGGGCAACAACGAGTC 1027474 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTT 55605 | ||||| ||||||||| |||||||||| ||| || || |||| ||||| Sbjct 1027475 GATCGAGGCGTACACGAGCAACATCTACACTCGCAGGGTGCTCTCAGGAGAGTT 1027528 >seq569 Length=390965 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| || |||||||| ||||| ||| | || ||||| || ||| Sbjct 26662 GTGAAGATGTAACGAGGACTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGT 26721 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||| | ||||||| |||||||||||| || |||||||||||| Sbjct 26722 CCCAGGGGCTGCAGGATGTTTACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTGACA 26781 Query 117425 ATCGT 117429 || || Sbjct 26782 ATTGT 26786 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | ||||| ||||| ||||| || | || || ||||||||| Sbjct 26662 GTGAAGATGTAACGAGGACTGGCAGCATCTTTGCCTCCATTGATGCGAGTACCAAACTGT 26721 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| |||| ||| | ||||||| |||||| || ||||| ||||| || ||| Sbjct 26722 CCCAGGGGCTGCAGGATGTTTACGTTGTTGCTGCCCACAAAGTTCTGGGCCAAGTTGACA 26781 Query 152149 ATCGT 152153 || || Sbjct 26782 ATTGT 26786 >seq558 Length=349536 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 123208 TACTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 123267 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 123268 AAGTCGAAGGGGTTCT 123283 >seq33 Length=3077319 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||| ||||| |||| |||||| || | | ||||||||||| || || | |||||| Sbjct 3039102 TCATCCCTGCTGATCAGTTCATTGGAGTAGGTCAGGCCAGGCATGAGGCCTCTCTTCTTT 3039043 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | |||| |||||||| ||||| || |||||||||||| || || ||||| || Sbjct 3039042 AGCCAATAGATGGCAGCAAAGGAGCCTGAGAAGAAGATGCCCTCCACGGCTGCAAAAGCC 3038983 Query 74892 ACAAGGCG 74899 ||||| || Sbjct 3038982 ACAAGTCG 3038975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547012264643000