Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq345 215 6e-51 seq226 172 6e-38 seq68 136 5e-27 seq7633 131 2e-25 seq38 109 6e-19 seq2815 104 3e-17 seq1233 104 3e-17 seq1462 91.5 2e-13 >seq345 Length=614307 Score = 215 bits (238), Expect = 6e-51 Identities = 904/1398 (65%), Gaps = 63/1398 (5%) Strand=Plus/Minus Query 80395 GTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATC 80454 ||||| | ||| | | ||||||||| || |||||||| || ||| |||||| |||||| Sbjct 404388 GTGTACGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATC 404329 Query 80455 GGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCAA-ATCTGA 80513 || | | || ||| || | || ||||||||| ||| | ||| || | || Sbjct 404328 GGCGCCAGCAGCAGGCTGTTTCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTC 404269 Query 80514 C-----CAAAAATCAACCCCAACGCTGTGACCCCACATGTCGTGCTGCAAGATGCCCT-- 80566 | || | ||| | ||| |||||||||||| ||||| ||||||| Sbjct 404268 CAGTCCCACAGGTCAGTCGGCGTCTTGT---CCCACATGTCGTACTGCAGGATGCCCCTG 404212 Query 80567 CCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCC---AGCTCAC 80623 | |||| || || || || |||||||||| |||||| || |||||| ||||| | Sbjct 404211 CTGACG--GGCGAGCCTTCGTACGTCTCGTAGGGGCCCA--GT-TTGGCCGCGAGCTCGC 404157 Query 80624 AC---GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGC 80680 | | ||||| | || |||| || ||| |||||| | |||| | | || Sbjct 404156 AGCTGGCCTCCAGA---GCGGCGTAGTAGATGGTCTCAAACATCTGGATGTTGAG-CAGC 404101 Query 80681 -GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGA 80739 | |||| || || || | | | ||||| ||||| |||| || | ||||| Sbjct 404100 TGAGCCTCCGGACTTTCAAAGGGGTAACGCATCAAGATGAAGGCGTCTGCTAAACCCTGG 404041 Query 80740 ACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAA 80799 || ||||| ||||||| | |||||| ||||| || ||||||||| || | ||||| Sbjct 404040 ACTCCGATTCCGATCGGCCTGTGGCGTTTGTTGGACATCTCGGCCTCGGGGACCGGGTAG 403981 Query 80800 AAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGT---GTAACATCATGA 80856 |||| | || |||| ||||| ||| | | || | | | || ||| ||| Sbjct 403980 TAGTTGATTTCAATGATCTTGTTCAAGTT---TTTGACTATCACTTTGGTCACAG-ATGC 403925 Query 80857 -AGTTTCTGAAAGTCGAATTGGTTCCCCTTCACAAATGCCGGA-AGGCTCAG------GG 80908 ||||| | |||||| || || | | ||| || || | | | | || || Sbjct 403924 CAGTTTTTTAAAGTC--ATAAGTGCGC--TCAGGCGTGACGTACATGTTGAGAGCGATGG 403869 Query 80909 ACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACA 80968 | ||||||||||| || |||||||| || || || | || |||| |||||||||| Sbjct 403868 ATGCCAGATTGCAAACTGCCACCTCGTCGGCGCTGGTGTATTCCACGACCTCCGTGCACA 403809 Query 80969 AATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCT 81028 | || |||| || || ||||| || | |||||| ||| |||||| ||||| | Sbjct 403808 AGTTGCTGCACTTGATGGTGCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCACGCGTCTT 403749 Query 81029 TGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCT 81088 |||| |||||||||| || |||||||| ||| |||| | |||||||| ||||| || Sbjct 403748 TGTACAACATGTACGGCGTTCCGGTCTCCGTCTGGGACTCTATGATGGCGTACCAAAGCT 403689 Query 81089 CGCGCGCCTTGACCAC---CTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCT 81144 | || || ||||| ||| | | ||||| | | || | | ||| |||| Sbjct 403688 GCTGAGCTTTCACCACACGCTT---CACCCTCCCTTCCTTCTCGTATGTAGTGTACAGCT 403632 Query 81145 TCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 || || |||| | || || ||| | || |||||||| || |||||||| Sbjct 403631 TC-TCAAACTCCTCCCCCCAGCACTCGTCGAGCCCCGGACACTCGTTGGGACACATCAGA 403573 Query 81205 TGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 |||||| || | |||| || ||||||||| ||| |||||||| ||||| | Sbjct 403572 GACCAGTCCTGGTTGCTCTCCACTCGCTTCATGAACAGGTCGGGGATCCACAGGGCATAG 403513 Query 81265 AACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGTCC 81324 || ||||| | | | | |||||| | || ||| || ||| || ||||| Sbjct 403512 AAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCAGTGTTCTTCTTCAGCTCTAGGAAGTCA 403453 Query 81325 ATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC----CTTGCGACGGCC 81380 | | ||| |||||| ||||||| |||| ||||| | ||| ||| | ||| Sbjct 403452 AACACGTCAAAATGCCAAGGCTCCAAGTACATGGCGAAGGCCCCGGGTCTTTTG-TTGCC 403394 Query 81381 ACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCATC 81440 ||| || | |||||| || || || ||| | || | || ||| || | | || | Sbjct 403393 ACCTTGATCGACGTAGCGAGCGGTGTTGTTGTAAACTCTCAGCATGGGAACCAGCCCGTT 403334 Query 81441 TGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGATTGAAAG 81500 || | ||||| ||||| |||| ||| ||| | | ||||| | | Sbjct 403333 GGAGTTCCCGTTGGTACCGGCGATGTAGCTCCCAGTGGATCTGATGCAGCTGACCGCTAC 403274 Query 81501 ACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAATTCC 81560 || ||||| || | |||| ||||| | || ||| | |||| ||| || || || || Sbjct 403273 GCCAATGCCTCCGGCAGACTTGGAAATGAGGGCGCACTGCTTCAGGGTGTCGTAGATGCC 403214 Query 81561 CTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTTTGA 81620 |||||||| || | ||||||| | |||||||| ||||| |||| ||| || | || | Sbjct 403213 TTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAGCAGCTGGACAGCTGCGGCCGATTGGT 403154 Query 81621 GCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATA 81680 || || ||||| || || || | |||||| |||| | | ||||| ||| | || Sbjct 403153 TCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTGAACCACTTCTCTGACAGCAGATTGTA 403094 Query 81681 GGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAAACA 81739 || || | | ||| | | || ||| ||||| || || | || || | ||| | || Sbjct 403093 CGTCTCGATGGCCGCTTCG-ATGTCGGTCCCGTGGATCCCAACAGACACCCTCATGAGCA 403035 Query 81740 TGTACTG-GGGCGTCTCG 81756 ||| ||| ||||| |||| Sbjct 403034 TGTGCTGCGGGCG-CTCG 403018 >seq226 Length=808630 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| || || |||||||| || || || ||||| ||| | || Sbjct 361577 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 361636 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| |||| | ||||| || || ||||||||||| || || ||||| |||||| Sbjct 361637 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAG 361696 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || || || || ||||| || || |||| || ||||| | ||||| || Sbjct 361697 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 361756 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| |||||||| || || ||| ||||||| | ||||| || Sbjct 361757 ATCCAGAAGGAGTCCACTCTCCACCTGGTCCTGCGTCTGAGGGGTGGGCA 361806 >seq68 Length=2311667 Score = 136 bits (150), Expect = 5e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || || ||||| || || | ||||| ||| ||| Sbjct 1552369 ATGCAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACGGTGGAGGTGGAGCACGGT 1552428 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | | |||||||||| || ||||| || || || || ||||| |||||| Sbjct 1552429 GACACCATAGAGACCGTGAAGGCTAAGATCCAGGAAAAAGAAGGCATCCCTCCTGACCAG 1552488 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| || || || || ||| || ||||| | ||||| || Sbjct 1552489 CAGAGACTGATTTTTGCTGGCAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTACAAC 1552548 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || | |||||||| || || || || ||| ||||||| Sbjct 1552549 ATCGATAAGGAATCAACCCTGCACCTGGTCCTGCGTCT 1552586 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| | |||||||| ||||| || || || ||||| || || | ||||| ||| ||| Sbjct 1552596 ATGAAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACGGTGGAGGTGGAGCACGGT 1552655 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | | |||||||||| || ||||| || || || || ||||| |||||| Sbjct 1552656 GATACCATAGAGACCGTGAAGGCTAAGATCCAGGAAAAAGAAGGCATCCCTCCTGACCAG 1552715 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || ||||||||||| || || || || ||| || ||||| | ||||| || Sbjct 1552716 CAGAGACTGATTTTTGCTGGCAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTACAAC 1552775 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || | |||||||| | || || || ||| ||||||| | ||||| Sbjct 1552776 ATCGATAAGGAATCACCCCTGCACCTGGTCCTGCGTCTGAGAGGTGG 1552822 >seq7633 Length=1847 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 |||| ||||| || ||||| || || || ||||| || || || ||||| ||| | | || Sbjct 1556 TGCAGATCTTCGTGAAGACCCTCACTGGTAAGACCATCACGCTGGAGGTGGAGCCCGATG 1615 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | ||| | | |||| ||||| || |||||||| || || || ||||| ||||||| Sbjct 1616 ACAACATAGAGACAGTGAAAGCTAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGC 1675 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 || | || ||||||||||| || || || || ||| || ||||| | ||||| | Sbjct 1676 AGAGGCTGATTTTTGCTGGGAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTACGACA 1735 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 |||| |||||||| || || || || ||| ||||| Sbjct 1736 TCCAGAAGGAATCAACCCTCCACCTGGTCCTGCGT 1770 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 |||| ||||| || |||||||| || || || ||||| ||||||||| | || ||||||| Sbjct 1403 TGAAAGCTAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTGATTTTTG 1462 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 |||| || || || || ||| || ||||| ||||||| || |||| |||||||| | Sbjct 1463 CTGGGAAACAGCTGGAAGATAGCCGGACCCTGTCAGACTACAACATCCAGAAGGAATCAA 1522 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || ||| ||||| | | ||||| Sbjct 1523 CCCTCCACCTGGTCCTGCGTTTGAGGGGTGG 1553 >seq38 Length=2821725 Score = 109 bits (120), Expect = 6e-19 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 80929 ACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTA 80988 ||||| ||| || ||| |||| ||||| |||||||||| || || || || || Sbjct 1026625 ACCTCATCATCACTTGTGTACTCTACGATCTCCGTGCACAGGTTGCTGGATTTGATGGTG 1026566 Query 80989 CCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTA 81048 |||||||||| |||||| ||| |||||| |||||||||||| |||||| || || Sbjct 1026565 CCCAGGTTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTC 1026506 Query 81049 CCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACC 81105 || || || ||| |||| || |||||||| ||| | || | ||||| |||||| Sbjct 1026505 CCRGTTTCTGTCTGCGACTCGATGATGGCGTACCACAGCTGCTGAGCCTTCACCACC 1026449 >seq2815 Length=13304 Score = 104 bits (114), Expect = 3e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 |||| | |||| | ||||| || || ||||||||||| ||||| ||||| ||||||||| Sbjct 2859 AGCACTKAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGCAG 2918 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 | || || || || | ||||| || || |||| || ||||| | || || || || Sbjct 2919 AGGCTGATCTTCGCCAGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGATTACAACATC 2978 Query 27589 CAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| || || ||||| || ||| ||||||| | ||||| Sbjct 2979 CAGAAGGTGTCAACCCTTCACCTGGTCCTGCGTCTGAGGGGTGG 3022 Score = 96.9 bits (106), Expect = 4e-15 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 |||| || |||| | ||||| || || ||||||||||| ||||| ||||| ||||||||| Sbjct 181 AGCACTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGCAG 240 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 | || || || || | ||||| || || |||| || ||||| | || || || || Sbjct 241 AGGCTGATCTTCGCCAGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGATTACAACATC 300 Query 27589 CAAAAGGAATCCACTCTTCATCTAGTCTTGC 27619 || |||| || || ||||| || ||| ||| Sbjct 301 CAGAAGGTGTCAACCCTTCACCTGGTCCTGC 331 >seq1233 Length=91233 Score = 104 bits (114), Expect = 3e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 |||| || |||| | ||||| || || ||||||||||| || || ||||| ||||||||| Sbjct 81389 AGCACTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGCAG 81330 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 | || || || || | ||||| || || |||| || ||||| | ||||| || || Sbjct 81329 AGGCTGATCTTCGCCAGCAAGCAGCTTGAAGATGGCCGCACCCTGTCCGACTACAACATC 81270 Query 27589 CAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 || |||| || || ||||| || ||| ||||||| Sbjct 81269 CAGAAGGTGTCAACCCTTCACCTGGTCCTGCGTCT 81235 >seq1462 Length=72336 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAG 27528 |||| || |||| | ||||| || || ||||||||||| | || |||| ||||||||| Sbjct 21973 AGCACTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGTCATCCCTCTTGACCAGCAG 21914 Query 27529 CGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTC 27588 | || || || || | ||||| || || |||| | ||||| | ||||| || || Sbjct 21913 AGGCTGATCTTCGCCAGCAAGCAGCTTGAAGATGGCCACACCCTGTCCGACTACAACATC 21854 Query 27589 CAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| || | ||||| || ||| ||||||| | ||||| Sbjct 21853 CAGAAGGTGTCAAYCCTTCACCTGGTCCTGCGTCTGAGGGGTGG 21810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570098066309200