Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq19 107 2e-18 >seq19 Length=3792234 Score = 107 bits (118), Expect = 2e-18 Identities = 132/179 (74%), Gaps = 1/179 (1%) Strand=Plus/Minus Query 32653 AAATCAGAATAGCCAGAGCCTTGTGGTTATATTTTATCTCTAAAGGTATAGAATATCTAG 32712 ||| |||| | || |||| |||||| ||||| ||||||| || || || ||||| | Sbjct 1300575 AAACCAGA-TGGCAGGAGCACTGTGGTGGTATTTCGTCTCTAAGGGCATTGAGTATCTGG 1300517 Query 32713 ATACTATTTTCTTCATAATGAGAAAGAAATTTAACCAAGTTAGCTTTTTGCACGTATACC 32772 | || | || ||||| |||| || ||||| ||||| || | ||| ||||||| |||| Sbjct 1300516 ACACGGTGTTTTTCATCCTGAGGAAAAAATTCAACCAGGTGACCTTCCTGCACGTCTACC 1300457 Query 32773 ACCATTTTACCATGTTTACTTTAGGATGGATAGGGATTAAATGGTTTGCAGGAGGACAG 32831 |||| | | |||||| || | | ||||| || || |||||| | |||||||||||| Sbjct 1300456 ACCACTGCAGCATGTTCACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACAG 1300398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 602956228248400