Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq7633 107 2e-18 seq68 96.9 3e-15 >seq7633 Length=1847 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26989 TGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCG 27048 ||||||| || || || || || || || ||| | || || || || ||||| || | Sbjct 1556 TGCAGATCTTCGTGAAGACCCTCACTGGTAAGACCATCACGCTGGAGGTGGAGCCCGATG 1615 Query 27049 ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAAC 27108 || || |||| || ||| || || || |||||||||||||| || || || || | Sbjct 1616 ACAACATAGAGACAGTGAAAGCTAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGC 1675 Query 27109 AGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACA 27168 || | | || | || || ||||| ||||||| || |||| | ||||| ||| ||| Sbjct 1676 AGAGGCTGATTTTTGCTGGGAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTACGACA 1735 Query 27169 TTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | || ||||| || ||| | || |||| |||||||| |||| ||||| Sbjct 1736 TCCAGAAGGAATCAACCCTCCACCTGGTCCTGCGTTTGAGGGGCGGCAT 1784 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || |||||||||||||| || || || || ||| | | || | || || ||| Sbjct 1411 AAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTGATTTTTGCTGGGAAA 1470 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || ||||||| || |||| | || || |||||||| || ||||| || ||| | || Sbjct 1471 CAGCTGGAAGATAGCCGGACCCTGTCAGACTACAACATCCAGAAGGAATCAACCCTCCAC 1530 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGC 27215 |||| |||||||| |||||||| Sbjct 1531 CTGGTCCTGCGTTTGAGGGGTGGC 1554 >seq68 Length=2311667 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/233 (70%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA--ACCG 27044 ||||||||| ||||| || || || || || ||| | || || | || ||||| || | Sbjct 1552368 CATGCAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACGGTGGAGGTGGAGCACGG 1552427 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 | ||| | || |||| || || || || || || ||||||||||| || || || Sbjct 1552428 T--GACACCATAGAGACCGTGAAGGCTAAGATCCAGGAAAAAGAAGGCATCCCTCCTGAC 1552485 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||| | | || | || |||||||| ||||||| || |||| | ||||| ||| Sbjct 1552486 CAGCAGAGACTGATTTTTGCTGGCAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTAC 1552545 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||||| || ||| | || |||| ||||| || || | ||||| Sbjct 1552546 AACATCGATAAGGAATCAACCCTGCACCTGGTCCTGCGTCTGAGGAG-GGCAT 1552597 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/233 (69%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGA--ACCG 27044 |||| |||| ||||| || || || || || ||| | || || | || ||||| || | Sbjct 1552595 CATGAAGATCTTTGTGAAGACCCTCACTGGTAAGACCATCACGGTGGAGGTGGAGCACGG 1552654 Query 27045 TCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 | || | || |||| || || || || || || ||||||||||| || || || Sbjct 1552655 T--GATACCATAGAGACCGTGAAGGCTAAGATCCAGGAAAAAGAAGGCATCCCTCCTGAC 1552712 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || ||| | | || | || |||||||| ||||||| || |||| | ||||| ||| Sbjct 1552713 CAGCAGAGACTGATTTTTGCTGGCAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTAC 1552772 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| | ||||| || || | || |||| ||||| || | |||||||| Sbjct 1552773 AACATCGATAAGGAATCACCCCTGCACCTGGTCCTGCGTCTGAGAGGTGGCAT 1552825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434756474443200