Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq101 138 1e-27 >seq101 Length=1578606 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| ||||| |||||||| || || |||||||| |||||||| | ||| Sbjct 214037 TGTGCGATCATGTAGGTGAGAAGAGCGTAGCTGGCGATGTTGAAAGGCACCCCCAGACCC 214096 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| |||| || || || ||||| ||||||||||| || | ||||||||| || Sbjct 214097 ATGTCGGCCGAGCGCTGGTACAGCTGACAGGACAGCTCGCCGTCACAGACGTAGAACTGA 214156 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | |||||| ||||| || ||||| || ||||| || Sbjct 214157 CACAGAGCGTGGCAGGGGGGCAGAGCCATGAGGGGGAGGTC 214197 Score = 138 bits (152), Expect = 1e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 || ||||| || ||||| || ||||| |||||| | || || || ||||||||| | Sbjct 214197 GACCTCCCCCTCATGGCTCTGCCCCCCTGCCACGCTCTGTGTCAGTTCTACGTCTGTGAC 214138 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||| ||||| || || || |||| |||||||| | |||||||| ||| Sbjct 214137 GGCGAGCTGTCCTGTCAGCTGTACCAGCGCTCGGCCGACATGGGTCTGGGGGTGCCTTTC 214078 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || |||||||| ||||| ||||||||||| || Sbjct 214077 AACATCGCCAGCTACGCTCTTCTCACCTACATGATCGCACA 214037 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || ||||||||||||||||| |||||||| || || || | ||| |||||||| Sbjct 215435 TATTCTGCACCAAAGTGTCTCCACTGAAACCCGTAAACAGGACCGAGGTCCCCCTCCTCT 215494 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || || || ||| | |||||||| ||| |||| ||||||| || |||||||||||| Sbjct 215495 CGGCCTGTAAAGCCCAGGTTGTCCAGGAAGGCTCGGGACCCGTTGGCATCCCAGATCTTC 215554 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGT 7050 || || || |||||||||| ||| || Sbjct 215555 ACACCTTTCTCTGACAGCTCCTTGGCGTTTGT 215586 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 34295 ACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGA 34354 || ||| |||||||||| || || |||||||||||||| || ||||||| ||| Sbjct 215586 ACAAACGCCAAGGAGCTGTCAGAGAAAGGTGTGAAGATCTGGGATGCCAACGGGTCCCGA 215527 Query 34355 GACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTAC 34414 | ||| |||||||| | ||| || || || |||||||| ||| | || || || ||| Sbjct 215526 GCCTTCCTGGACAACCTGGGCTTTACAGGCCGAGAGGAGGGGGACCTCGGTCCTGTTTAC 215467 Query 34415 GGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 ||||| ||||||||||||||||| || || || Sbjct 215466 GGGTTTCAGTGGAGACACTTTGGTGCAGAATA 215435 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| |||||||| | |||||| | ||| || ||||| ||| | ||||||| Sbjct 214266 TTTGGGTTCCAAGCGCACATGATGATCCTCCGGTCCTCTGGGTTTTTCTTGATGGTGTCG 214325 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCG 6875 || | || ||||||||||||| | |||||||||| Sbjct 214326 ATAATGTTCTGCAGCTGGTCCACACCCTGTCCCG 214359 Score = 89.7 bits (98), Expect = 5e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 34470 CGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATG 34529 |||||||||| | ||||||||||||| || | ||||||||| | ||| ||||| || | Sbjct 214359 CGGGACAGGGTGTGGACCAGCTGCAGAACATTATCGACACCATCAAGAAAAACCCAGAGG 214300 Query 34530 ACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 || | |||||| | |||||||| |||||||| || Sbjct 214299 ACCGGAGGATCATCATGTGCGCTTGGAACCCAAA 214266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448095506305200