Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq226 192 1e-43 seq68 145 2e-29 seq7633 138 3e-27 seq2815 127 5e-24 seq1233 118 2e-21 seq244 105 2e-17 seq1462 102 2e-16 seq13 102 2e-16 seq966 95.1 3e-14 seq2 95.1 3e-14 seq18886 86.0 1e-11 >seq226 Length=808630 Score = 192 bits (212), Expect = 1e-43 Identities = 174/218 (80%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || | ||||| | |||||| Sbjct 361788 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 361729 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || | || ||||||||||| | |||||||||||| Sbjct 361728 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 361669 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || ||||| ||||||||| | || ||||| || ||||| ||| Sbjct 361668 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 361609 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT-TTTAT 211119 || || ||||| ||||| ||||| | |||||| ||||| Sbjct 361608 TTGCCAGTGAGGGTCTTGACAAAAATCTGCATGTTTAT 361571 >seq68 Length=2311667 Score = 145 bits (160), Expect = 2e-29 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || || || || | |||||| || || | ||||||| | |||| Sbjct 1552580 AGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGACAGGGTCCGGCTATCT 1552521 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || || || || | || ||||||||||| | ||||| || ||| Sbjct 1552520 TCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTTTCC 1552461 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| | || ||||||||| | || ||||| | ||||| ||| Sbjct 1552460 TGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCCACCTCCACCGTGATGGTC 1552401 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| ||||| | |||||| || Sbjct 1552400 TTACCAGTGAGGGTCTTCACAAAGATCTGCATGTT 1552366 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || | || || || | |||||| || || | ||||||| | |||| Sbjct 1552807 AGGACCAGGTGCAGGGGTGATTCCTTATCGATGTTGTAGTCGGACAGGGTCCGGCTATCT 1552748 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| ||||| || || || || | || ||||||||||| | ||||| || ||| Sbjct 1552747 TCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTTTCC 1552688 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| | || ||||| ||| | || ||||| | ||||| ||| Sbjct 1552687 TGGATCTTAGCCTTCACGGTCTCTATGGTATCACCGTGCTCCACCTCCACCGTGATGGTC 1552628 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | || ||| Sbjct 1552627 TTACCAGTGAGGGTCTTCACAAAGATCTTCAT 1552596 >seq7633 Length=1847 Score = 138 bits (152), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || || || || ||||||| || || | ||||||| | |||| Sbjct 1766 AGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGACAGGGTCCGGCTATCT 1707 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || || || || | || ||||||||||| | ||||| |||||| Sbjct 1706 TCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC 1647 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| | || ||| ||||| | || ||||| || ||||| ||| Sbjct 1646 TGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCACCTCCAGCGTGATGGTC 1587 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 || || ||||| ||||| || || | ||||| Sbjct 1586 TTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 Score = 104 bits (114), Expect = 5e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || || || || |||||||| || || | ||||||| | |||| Sbjct 1538 AGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCTGACAGGGTCCGGCTATCT 1479 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || || || || | || ||||||||||| | ||||| |||||| Sbjct 1478 TCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC 1419 Query 211023 TGGATCTTTTGTTTCAC 211039 |||||||| |||||| Sbjct 1418 TGGATCTTAGCTTTCAC 1402 >seq2815 Length=13304 Score = 127 bits (140), Expect = 5e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||| | || |||||||| ||||| | ||||| | |||||| Sbjct 329 AGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCT 270 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||||| |||||||| || | || ||||||||||| | ||||||||||||| Sbjct 269 TCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCC 210 Query 211023 TGGATCTT 211030 |||||||| Sbjct 209 TGGATCTT 202 Score = 127 bits (140), Expect = 5e-24 Identities = 105/128 (82%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||| | || |||||||| ||||| | ||||| | |||||| Sbjct 3007 AGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCT 2948 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||||| |||||||| || | || ||||||||||| | ||||||||||||| Sbjct 2947 TCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCC 2888 Query 211023 TGGATCTT 211030 |||||||| Sbjct 2887 TGGATCTT 2880 >seq1233 Length=91233 Score = 118 bits (130), Expect = 2e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||| | || |||||||| || || | ||||| | |||||| Sbjct 81241 AGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 81300 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||||| |||||||| || | || ||||||||||| | |||||||||||| Sbjct 81301 TCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 81360 Query 211023 TGGATCTT 211030 |||||||| Sbjct 81361 TGGATCTT 81368 >seq244 Length=814671 Score = 105 bits (116), Expect = 2e-17 Identities = 110/143 (77%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||| | || |||||| | || || | ||||| | |||||| Sbjct 499798 AGGACCAGGTGAAGGGTAGACACCTTCTGGATGGTGTAGTCGGACAGGGTGCGGCCATCT 499739 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| | |||||| || | || ||||||||||| | | | |||| |||| Sbjct 499738 TCAAGCTGCTTGCCGGTGAAGATCAGCCTCTGCTGGTCAGGAGGGA-TGCCTCCTCGTCC 499680 Query 211023 TGGATCTTTTGTTTCACGTTTTC 211045 |||||||| ||| || ||||| Sbjct 499679 TGGATCTTGGCTTTGACATTTTC 499657 >seq1462 Length=72336 Score = 102 bits (112), Expect = 2e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| | ||| | || |||||||| || || | ||||| |||||| Sbjct 21825 AGGACCAGGTGAAGGRTTGACACCTTCTGGATGTTGTAGTCGGACAGGGTGTGGCCATCT 21884 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||||| |||||||| || | || |||||| |||| | ||||||||||| Sbjct 21885 TCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAAGAGGGATGACTTCCTTGTCC 21944 Query 211023 TGGATCTT 211030 |||||||| Sbjct 21945 TGGATCTT 21952 >seq13 Length=4660326 Score = 102 bits (112), Expect = 2e-16 Identities = 116/154 (75%), Gaps = 4/154 (3%) Strand=Plus/Minus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 |||||| | ||||| |||| | ||||| || || || | || ||||||||||| Sbjct 4660084 AGGGTCTGGCTATCTTTCAGCCGTTTGCCAATAAAAATCAGCCTCTGCTGGTCAGGAGGG 4660025 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCA--GAGCTTTCAA 211065 | ||||| |||||||||||||| |||||| | || ||||||||| ||||| | | Sbjct 4660024 ATGCCTTCTTTGTCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTCATTGAGCT--CCA 4659967 Query 211066 CCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTT 211099 |||| || ||||| || ||||| ||||||||||| Sbjct 4659966 CCTCCAGGGTGATAGTTTTTCCAGTGAGAGTCTT 4659933 >seq966 Length=135400 Score = 95.1 bits (104), Expect = 3e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 210919 TGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTG 210978 ||||| | || |||||||| || || | ||||| | |||||||| |||||||||| | Sbjct 102725 TGGACACCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCAAGCTGCTTGCTGG 102666 Query 210979 CGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT 211030 ||||||| || | || ||||||||| | | ||||||||||| |||||||| Sbjct 102665 CGAAGATCAGCCTCTGCTGGTCAGGAAGGATGCCTTCCTTGTCATGGATCTT 102614 >seq2 Length=10495606 Score = 95.1 bits (104), Expect = 3e-14 Identities = 121/164 (74%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || ||||||||||| |||||||||||||||| | | ||| ||||||||| || ||| Sbjct 7256661 GGCAGAGGAGGACAGTCTGCTCTGCGTTTTGCTCGTTTAAGAATGGAAAAGAGACATAAC 7256602 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 ||| ||||||||||||| |||| ||| | ||| ||| | ||| |||| |||| | Sbjct 7256601 TACGTGAGAAAAGTTGCTGAGACCGCTGTCCAGCTCTTTGTGTCCAATGACA--AAGT-T 7256545 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGAC 139982 ||| | || || || ||||| || || || || || ||||| Sbjct 7256544 AATGTGGCAGGAATGGTCTTGGCTGGCTCTGCCGATTTTAAGAC 7256501 >seq18886 Length=299 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| || ||| | || |||||||| | || | ||||| | |||||| Sbjct 228 AGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGCAGTCGGACAGGGTGCGGCCATCT 169 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGA 211004 || ||||||||||| |||||||| || | || ||||||||| Sbjct 168 TCAAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGA 127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158709644051525