Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq226 143 6e-29 seq2815 98.7 2e-15 seq1233 93.3 1e-13 >seq226 Length=808630 Score = 143 bits (158), Expect = 6e-29 Identities = 164/219 (75%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| |||||||||||||| || || |||| ||||| |||| || || | ||||| Sbjct 361789 CAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 361730 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| || |||||||| || | || ||||| || || || ||||||||||| Sbjct 361729 TTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 361670 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||| |||||||| || ||||| || | ||||| || Sbjct 361669 CTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 361610 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT-TTTAT 225718 |||||| || | || || | || | ||||| ||||| Sbjct 361609 CTTGCCAGTGAGGGTCTTGACAAAAATCTGCATGTTTAT 361571 >seq2815 Length=13304 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || | || |||| |||||||||| || || | ||||| Sbjct 330 CAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATC 271 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| | |||||||| || | || ||||| || || || ||||||||||| Sbjct 270 TTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTC 211 Query 225621 TTGGATCTT 225629 |||||||| Sbjct 210 CTGGATCTT 202 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || | || |||| |||||||||| || || | ||||| Sbjct 3008 CAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATC 2949 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| | |||||||| || | || ||||| || || || ||||||||||| Sbjct 2948 TTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTC 2889 Query 225621 TTGGATCTT 225629 |||||||| Sbjct 2888 CTGGATCTT 2880 >seq1233 Length=91233 Score = 93.3 bits (102), Expect = 1e-13 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || || || | || |||| ||||| |||| || || | ||||| Sbjct 81240 CAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 81299 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| |||||||| | |||||||| || | || ||||| || || || ||||||||||| Sbjct 81300 TTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 81359 Query 225621 TTGGATCTT 225629 |||||||| Sbjct 81360 CTGGATCTT 81368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192076105870790