Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq101 145 6e-30 >seq101 Length=1578606 Score = 145 bits (160), Expect = 6e-30 Identities = 137/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 29703 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 29762 ||||| || || || | || ||| || |||||||| ||||| |||| ||||||||||| Sbjct 214014 CTCCCACCTCGAGTCCTGCGATGTGTGCGATCATGTAGGTGAGAAGAGCGTAGCTGGCGA 214073 Query 29763 TGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCT 29822 |||| || |||||||| || |||||||| | || | |||||| ||||| || || |||| Sbjct 214074 TGTTGAAAGGCACCCCCAGACCCATGTCGGCCGAGCGCTGGTACAGCTGACAGGACAGCT 214133 Query 29823 CTCCGTCGCTCACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAG 29877 | ||||| | ||||| |||||||||| || ||||| || || || |||||||| Sbjct 214134 CGCCGTCACAGACGTAGAACTGACACAGAGCGTGGCAGGGGGGCAGAGCCATGAG 214188 Score = 107 bits (118), Expect = 2e-18 Identities = 126/167 (75%), Gaps = 10/167 (6%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTC----CCTGTGCTC 30072 || || |||||||| |||||||| || || || ||||| ||||| || ||||| Sbjct 215447 AAGTGTCTCCACTGAAACCCGTAAACAGGACCGAGGTCCCCCTCCTCTCGGCCTGTA--- 215503 Query 30073 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30132 |||||| ||||||| ||| ||| ||| |||||||| ||||||||||| || || || Sbjct 215504 -AAGCCCAGGTTGTCCAGGAAGGCTCGGGACCCGTTGGCATCCCAGATCTTCACACCTTT 215562 Query 30133 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCA 30179 ||| || ||||| |||| |||||| || || ||| ||| | ||||| Sbjct 215563 CTCTGACAGCTCCTTGGCGTTTGTTGATCC-CTG-CGACACGCAGCA 215607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406015760854510