Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq201 154 1e-32 seq101 150 1e-31 seq2015 87.8 1e-12 >seq201 Length=901643 Score = 154 bits (170), Expect = 1e-32 Identities = 226/320 (71%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 68998 ACCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAGTATA 69057 ||||| | ||||||| || ||| |||| ||||||||| | |||||||||||||||| Sbjct 429826 ACCTAAAGAGTCCAGCTGGTGCCACCTTGACAATAGGACCCCTGGAGGACACAGAGTATA 429885 Query 69058 AAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACGA 69117 |||||| || | |||| |||| || | ||||| ||| |||| || | | | Sbjct 429886 AAGACAAACCCAGCGAGGTGCACGGGTGCAGCAAGTTCTATCTCCCTACTACAGGTCAAA 429945 Query 69118 TGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATGA 69177 || |||||||||||| ||| ||| || | |||| || || ||||| |||| |||| Sbjct 429946 TGGTGGTCATCGGTTACGTGGAGGGCACACAGTACCCCTGCGATCAGCTCATCCTAATGA 430005 Query 69178 CCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAACT 69237 |||| || |||| ||||||| ||||| ||||| |||||||| | |||||| | Sbjct 430006 TACACGAGAACGGGAAGCTGTACGGGTATGATGGAGATGAGCTGCACGAGGTGGCGTCCA 430065 Query 69238 GTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCATG 69297 || || || | | ||| || ||| ||||||||| | | ||||||| || | Sbjct 430066 GTTTGATGCATCTAGATAAAGCTGGGCTAGACTATCCTGCGTCCAAGAGCTACTACTACA 430125 Query 69298 GGGAGGCCTTCAAACATATG 69317 | |||||||||||| || || Sbjct 430126 GCGAGGCCTTCAAAGATGTG 430145 >seq101 Length=1578606 Score = 150 bits (166), Expect = 1e-31 Identities = 139/176 (79%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 27197 CTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGA 27256 ||||| || || || | || ||| || |||||||| ||||| |||| ||||||||||| Sbjct 214014 CTCCCACCTCGAGTCCTGCGATGTGTGCGATCATGTAGGTGAGAAGAGCGTAGCTGGCGA 214073 Query 27257 TGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCT 27316 |||| || || ||||| || |||||||| |||| | |||||| |||||||| || |||| Sbjct 214074 TGTTGAAAGGCACCCCCAGACCCATGTCGGCCGAGCGCTGGTACAGCTGACAGGACAGCT 214133 Query 27317 CTCCATCGCTTACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGG 27372 | || || | ||||| |||||||| | |||||||| || || |||||||||||| Sbjct 214134 CGCCGTCACAGACGTAGAACTGACACAGAGCGTGGCAGGGGGGCAGAGCCATGAGG 214189 Score = 120 bits (132), Expect = 2e-22 Identities = 142/189 (75%), Gaps = 10/189 (5%) Strand=Plus/Plus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| |||| ||||| || || || ||||| || |||||||| || || || ||||| Sbjct 215425 CATGTCTTTGTATTCTGCACCAAAGTGTCTCCACTGAAACCCGTAAACAGGACCGAGGTC 215484 Query 27549 TCCCTCTTC----CCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 27604 ||||| || ||||| |||||| ||||||| ||| ||| ||| ||||||| Sbjct 215485 CCCCTCCTCTCGGCCTGTA----AAGCCCAGGTTGTCCAGGAAGGCTCGGGACCCGTTGG 215540 Query 27605 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 27664 | ||||||||||| || || ||||| || ||||| |||| |||||| || || ||| ||| Sbjct 215541 CATCCCAGATCTTCACACCTTTCTCTGACAGCTCCTTGGCGTTTGTTGATCC-CTG-CGA 215598 Query 27665 ACCACAGCA 27673 | ||||| Sbjct 215599 CACGCAGCA 215607 >seq2015 Length=36649 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/95 (82%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 69155 ATGTGACCAGCTTGTCCTGATGACCTGCGAGGACCAGAAGG-TGTACGGCTATGACGGAG 69213 || ||| || | ||||||||||| |||||||| |||||| ||||||| ||||| |||| Sbjct 20660 ATCTGATGAGTTCGTCCTGATGACTTGCGAGGAT-AGAAGGCTGTACGGTTATGATGGAG 20602 Query 69214 ACGAGCTGCATGTGGTGGCTAACTGTCTGGATCAG 69248 | |||||||||||||||||| | || |||| ||| Sbjct 20601 AGGAGCTGCATGTGGTGGCTGAACGTGTGGAACAG 20567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369373067154335