Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq345 437 1e-117 seq38 95.1 2e-14 >seq345 Length=614307 Score = 437 bits (484), Expect = 1e-117 Identities = 1277/1956 (65%), Gaps = 13/1956 (1%) Strand=Plus/Minus Query 77061 TTCTTTATATCATCATTCCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTA 77120 ||||| || || || ||||||| |||||| || | || | || |||||||| || Sbjct 404496 TTCTTCATCTCCTCGTTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 404437 Query 77121 ACTATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 77180 || || || || ||||| || | || || || ||||| || || ||||| || | || Sbjct 404436 ACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 404377 Query 77181 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAAT 77240 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 404376 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATCGGCGCCAGCAGC 404317 Query 77241 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 77300 | || ||||| | || || | ||| || || || || ||||| ||||| || Sbjct 404316 AGGCTGTTTCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 404257 Query 77301 TCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCA 77360 || | || ||||| | ||||| || || || || | || | || || Sbjct 404256 TCAGTCGGCGTCTTGTCCCACATGTCGTACTGCAGGATGCCCCTGCTGACGGGCGAGCCT 404197 Query 77361 TTATATGTTTCATAAGGTCCTTCTGTTT--CAGCTAGTTCACAACTCGCTTCCAATGCTC 77418 | || || || || || || | |||| | || || || || || || |||| || Sbjct 404196 TCGTACGTCTCGTAGGGGCC--CAGTTTGGCCGCGAGCTCGCAGCTGGCCTCCAGAGCGG 404139 Query 77419 CGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACG 77478 |||| || || || || || |||| | ||||| || || || ||| ||||| | Sbjct 404138 CGTAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGAGCCTCCGGACTTTCAAAGG 404079 Query 77479 GATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 | ||| | | | || ||||| |||||||| ||||| ||||| || || || || || | Sbjct 404078 GGTAACGCATCAAGATGAAGGCGTCTGCTAAACCCTGGACTCCGATTCCGATCGGCCTGT 404019 Query 77539 GTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTAT 77598 | | || ||||| || | || || || | || || || || || || || || || | Sbjct 404018 GGCGTTTGTTGGACATCTCGGCCTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTGT 403959 Query 77599 TGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCAT 77658 | | ||| | || | ||||| ||| ||||| ||| ||| | | | | Sbjct 403958 TCAAGTTTTTGACTATCACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGTGCGCT 403899 Query 77659 CTA---TAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAG 77715 | | || ||||||| | ||| || ||||| ||||| |||||||| ||||| | | Sbjct 403898 CAGGCGTGACGTACATGTTGAGAGCGATGGATGCCAGATTGCAAACTGCCACCTCGTCGG 403839 Query 77716 CGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTT 77775 || ||| |||| | | ||| || || | || || || ||||| ||||||||||| | Sbjct 403838 CGCTGGTGTATTCCACGACCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAGATTCT 403779 Query 77776 GTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAA 77835 | ||||||||||| | ||||| | ||| || || | || |||| || ||||| || Sbjct 403778 GCTGGTTGCTCTTCCTGTTGCACGCGTCTTTGTACAACATGTACGGCGTTCCGGTCTCCG 403719 Query 77836 TCTGTGATTCGATAATAGATTTCCAGA-CGACTCTAGCTTTTATCATAGATTTGTATCGC 77894 |||| || || || || | | ||| | | || |||||| | || | || | | Sbjct 403718 TCTGGGACTCTATGATGGCGTACCAAAGCTGCT-GAGCTTTCACCACACGCTTCACCCTC 403660 Query 77895 CTCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAAT 77954 | || | || ||| ||| || ||| ||||| || || ||||| || || | Sbjct 403659 CCTTCCTTCTCGTATGTAGTGTACAGCTTCTCAAACTCCTCCCCCCAGCACTCGTCGAGC 403600 Query 77955 CCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATA 78014 || || || || || || ||||||| |||||||| | || ||||| ||||| Sbjct 403599 CCCGGACACTCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACTCGCTTCATG 403540 Query 78015 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 || || || || ||||| || ||| || || |||| || ||| || || || || || Sbjct 403539 AACAGGTCGGGGATCCACAGGGCATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCA 403480 Query 78075 GTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATT 78134 || ||||| || || || || || || | | ||| ||||||| || || | || || Sbjct 403479 GTGTTCTTCTTCAGCTCTAGGAAGTCAAACACGTCAAAATGCCAAGGCTCCAAGTACATG 403420 Query 78135 GCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAA 78194 || | | || |||| ||| || || || ||||| | || | |||||||| || ||| Sbjct 403419 GCGAAGGCCCCGGGTCTTTTGTTGCCACCTTGATCGACGTAGCGAGCGGTGTTGTTGTAA 403360 Query 78195 ACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCA 78254 ||||||| ||| |||| | ||||| || | || || || || | || || || ||| Sbjct 403359 ACTCTCAGCATGGGAACCAGCCCGTTGGAGTTCCCGTTGGTACCGGCGATGTAGCTCCCA 403300 Query 78255 CTTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCG 78314 | | | || || | | || || || ||||| || ||| || || || ||| Sbjct 403299 GTGGATCTGATGCAGCTGACCGCTACGCCAATGCCTCCGGCAGACTTGGAAATGAGGGCG 403240 Query 78315 CAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAA 78374 || | |||| || |||||||| || || || ||||| || ||||| || | || Sbjct 403239 CACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAG 403180 Query 78375 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTA 78434 ||||| |||| || | || |||||||| || || | |||||||| || || || Sbjct 403179 CAGCTGGACAGCTGCGGCCGATTGGTTCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTG 403120 Query 78435 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGA 78494 ||||| || || || || |||||||| || || || || | ||| ||||| || Sbjct 403119 AACCACTTCTCTGACAGCAGATTGTACGTCTCGATGGCCGCTTCGATGTCGGTCCCGTGG 403060 Query 78495 ATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTATTTATT 78554 || || || | || | ||| | ||| ||||| || | || || ||| || ||| Sbjct 403059 ATCCCAACAGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGATT 403000 Query 78555 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTC 78614 |||| || || || |||| ||| || || || || ||||||| || || ||||| Sbjct 402999 TTCAGCAGATAGGAGCGCTCCAGAGTCTTGAATCCGAAGAAGTTGTAGGAGAAATCTCTG 402940 Query 78615 TCGTAAATAATAACAGAATTTAGTTTATCTTTGTATTTGGTAACAATATCCATGACAGTA 78674 || ||||| || | || || || ||||||| | ||| || | || | || Sbjct 402939 TCATAAATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCCAGAACGATGTGCA-GCGTGTC 402881 Query 78675 GTT-GAAATAATAGGAGATCGTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTC 78733 || || || || || || | || ||| || | ||||| | | || || Sbjct 402880 TTTGGAGATCATGGGGGAGTGGCGTTGGTTCAAAGGGTTGATGTAGTTGTACAGGTCCTC 402821 Query 78734 CATTACATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGC 78793 ||| || || || || | || || || || ||||| || || || ||||| || || || Sbjct 402820 CATCACGTCGCTGAACACCTTCTTGGTCTCTTTGTGCAGGTTTGAGACAGCGATCCTCGC 402761 Query 78794 AGCTAGAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAA 78853 ||| || || ||||| || || |||| || || ||||| || || || || |||| Sbjct 402760 AGCGAGGATGGCATAGTCGGGGTGTTTGGTCGTCAGCGTGGCAGCAATCTCAGCTGCTAG 402701 Query 78854 AATATCTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 | || | ||| | || ||||| || |||| || ||||| || || ||||||| ||| Sbjct 402700 CGTGTCGAGCTCCACGGTGGTGACGCCGCTATACAGACCTTGGATCACCTTCATGGTGAT 402641 Query 78914 TTTGACAGGATCTACAAACTCAGTGTTCAATCCATAACATAATTTTCT-AATACGAGATG 78972 | | || || |||||||||| ||||| ||||| || || |||| |||||||| | Sbjct 402640 CTGAGCCGGGTCCACAAACTCAGAGTTCAGGCCATAGCA-AAGCTTCTGGATACGAGAGG 402582 Query 78973 TGATTTTATCAAATATAACATTCTCCTTGCATCCAT 79008 |||||||||| || || ||| ||| | || |||| Sbjct 402581 TGATTTTATCGAACATGACACGCTCATGGCGGCCAT 402546 >seq38 Length=2821725 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 77701 CTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGA 77760 || ||||||||| | | | | || | || ||||| || || || || || |||||| Sbjct 1026630 CTCCTACCTCATCATCACTTGTGTACTCTACGATCTCCGTGCACAGGTTGCTGGATTTGA 1026571 Query 77761 TAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACG 77820 | |||||||| ||||| ||||||||||| | ||||| | |||||| || || || | | Sbjct 1026570 TGGTGCCCAGGTTTTGCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGTAAG 1026511 Query 77821 GAGTCCCGGTTTCAATCTGTGATTCGATAAT 77851 | ||||| ||||| |||| || ||||| || Sbjct 1026510 GCGTCCCRGTTTCTGTCTGCGACTCGATGAT 1026480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694410166122400