Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq345 428 6e-115 >seq345 Length=614307 Score = 428 bits (474), Expect = 6e-115 Identities = 1268/1943 (65%), Gaps = 19/1943 (1%) Strand=Plus/Minus Query 75656 TTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTA 75715 ||||| ||||| || ||||||| ||||| || | || | || |||||||| || Sbjct 404496 TTCTTCATCTCCTCGTTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGAGGGTTG 404437 Query 75716 ACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCC 75775 || || || || ||||| || | || || || ||||| || || ||||| || | || Sbjct 404436 ACGATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTACGCCTCG 404377 Query 75776 ACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAAT 75835 | || || ||||| |||| || || || || || || || ||||| || |||| || Sbjct 404376 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGACGCCGTGGGCATCGGCGCCAGCAGC 404317 Query 75836 AAACTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGA 75895 | || ||||| | || || | ||| || || || || ||||| ||||| || Sbjct 404316 AGGCTGTTTCTCACGCCGTGCTTGGCGATCTTCTCCTTCAGCAGCTTCCAGTCCCACAGG 404257 Query 75896 TCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCA 75955 || | || ||||| | ||||| || || || || |||| | || || Sbjct 404256 TCAGTCGGCGTCTTGTCCCACATGTCGTACTGCAGGATGCCCCTGCTGACGGGCGAGCCT 404197 Query 75956 TTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCG 76015 | || || ||||| | || || | || || ||||| || ||||| | || || Sbjct 404196 TCGTACGTCTCGTAGGGGCCCAGTTTGGCCGCGAGCTCGCAGCTGGCCTCCAGAGCGGCG 404137 Query 76016 TAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGA 76075 || || || || || || |||| | || || || || || |||| ||||| || Sbjct 404136 TAGTAGATGGTCTCAAACATCTGGATGTTGAGCAGCTGAGCCTCCGGACTTTCAAAGGGG 404077 Query 76076 TAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGT 76135 ||| | | | || || || ||||||| ||||| ||||| || || || || || || Sbjct 404076 TAACGCATCAAGATGAAGGCGTCTGCTAAACCCTGGACTCCGATTCCGATCGGCCTGTGG 404017 Query 76136 CTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTG 76195 | || ||||| || || || || || | ||||| || || || || || || || || Sbjct 404016 CGTTTGTTGGACATCTCGGCCTCGGGGACCGGGTAGTAGTTGATTTCAATGATCTTGTTC 403957 Query 76196 AGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTCCATCT 76255 | ||| |||| | ||||| ||| ||||| ||| ||| | | | || Sbjct 403956 AAGTTTTTGACTATCACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGTGCGCTCA 403897 Query 76256 ATC---ACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCA 76312 | || |||| || ||||| || ||||| ||||| ||||| || ||||| | || Sbjct 403896 GGCGTGACGTACATGTTGAGAGCGATGGATGCCAGATTGCAAACTGCCACCTCGTCGGCG 403837 Query 76313 TTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 ||| |||| | | ||||||||| | || || |||||||| || || ||||| || Sbjct 403836 CTGGTGTATTCCACGACCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAGATTCTGC 403777 Query 76373 TGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 ||||||||||| |||| || | ||| || || | | |||| ||||| || || || Sbjct 403776 TGGTTGCTCTTCCTGTTGCACGCGTCTTTGTACAACATGTACGGCGTTCCGGTCTCCGTC 403717 Query 76433 TGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGTA--TCGC 76489 || || || || || | | ||| | | || |||||| | | | || || | Sbjct 403716 TGGGACTCTATGATGGCGTACCAAA-GCTGCTGAGCTTTCACCACACGCTTCACCCTCCC 403658 Query 76490 TTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 ||| ||| || | ||||| | | ||||| || || ||||| || || | Sbjct 403657 TTCCTTCTCGTATGTAGTGTACAGCTTC--TCAAACTCCTCCCCCCAGCACTCGTCGAGC 403600 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || ||||| || || |||||||||| ||||| || | || || || ||||| Sbjct 403599 CCCGGACACTCGTTGGGACACATCAGAGACCAGTCCTGGTTGCTCTCCACTCGCTTCATG 403540 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || || || || ||||| || ||| || || |||| || ||| | || || || || Sbjct 403539 AACAGGTCGGGGATCCACAGGGCATAGAAAAGGTCTCTGGCTCTCTGCTCCTCCTTGCCA 403480 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 || ||||| || || |||||||| || | | ||| ||||||| || || | || || Sbjct 403479 GTGTTCTTCTTCAGCTCTAGGAAGTCAAACACGTCAAAATGCCAAGGCTCCAAGTACATG 403420 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | || |||| ||| || || || ||||| | || | || ||||| || ||| Sbjct 403419 GCGAAGGCCCCGGGTCTTTTGTTGCCACCTTGATCGACGTAGCGAGCGGTGTTGTTGTAA 403360 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 ||||||| ||| |||| | ||||| || | || || || || | || || || ||| Sbjct 403359 ACTCTCAGCATGGGAACCAGCCCGTTGGAGTTCCCGTTGGTACCGGCGATGTAGCTCCCA 403300 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 | | || || | | || ||| || ||||| || || || || || || Sbjct 403299 GTGGATCTGATGCAGCTGACCGCTACGCCAATGCCTCCGGCAGACTTGGAAATGAGGGCG 403240 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAA 76969 || | |||| ||||| |||||||| || || || || || ||||| || | || Sbjct 403239 CACTGCTTCAGGGTGTCGTAGATGCCTTCGATGCTGTCGTCTTTCATGGCGAGCAAGAAG 403180 Query 76970 CAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTG 77029 ||||| |||| || | || |||||||| || || | || ||||| || |||||| Sbjct 403179 CAGCTGGACAGCTGCGGCCGATTGGTTCCTGCGTTGAAGAGAGTCGGAGAGGCGTGAGTG 403120 Query 77030 AACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGA 77089 ||||| || || || || |||||||| || || || | ||||| || || || Sbjct 403119 AACCACTTCTCTGACAGCAGATTGTACGTCTCGATGGCCGCTTCGATGTCGGTCCCGTGG 403060 Query 77090 ATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATT 77149 || || |||| || | ||| | ||| ||||| || || || | ||| || ||| Sbjct 403059 ATCCCAACAGACACCCTCATGAGCATGTGCTGCGGGCGCTCGGCCACCTTGCCGTTGATT 403000 Query 77150 TTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTT 77209 |||| || || || |||| ||| || || || || ||||||| || || ||||| Sbjct 402999 TTCAGCAGATAGGAGCGCTCCAGAGTCTTGAATCCGAAGAAGTTGTAGGAGAAATCTCTG 402940 Query 77210 TCGTAAATAATAACCGAATTTAGTTTGTCCTTATATTTGGTAACAATATCCA---TGACA 77266 || ||||| || | || || || ||| || | | ||| || | || || | Sbjct 402939 TCATAAATGATGGCGGAGTTGAGGCGGTCTTTGTTCTCCAGAACGATGTGCAGCGTGTCT 402880 Query 77267 GTGGTAGAAATAATTGGAGATCGTATTCCATTTTTAGGATTAACATAGTTAAATAAGTCT 77326 || || || || || || | | || ||| || | ||||| | | ||| Sbjct 402879 TTG---GAGATCATGGGGGAGTGGCGTTGGTTCAAAGGGTTGATGTAGTTGTACAGGTCC 402823 Query 77327 TCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTA 77386 ||||| |||||||| || | || || || || ||||| || || || || || || || Sbjct 402822 TCCATCACGTCGCTGAACACCTTCTTGGTCTCTTTGTGCAGGTTTGAGACAGCGATCCTC 402763 Query 77387 GCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAG-GTGGCTGCTATTTCTGCCGC 77445 ||||| || || |||||||| || |||| || || ||| ||||| || || || || || Sbjct 402762 GCAGCGAGGATGGCATAGTCGGGGTGTTTGGTCGT-CAGCGTGGCAGCAATCTCAGCTGC 402704 Query 77446 TAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGC 77505 || || || | || | || || || ||| |||| || ||||| || || ||||||| Sbjct 402703 TAGCGTGTCGAGCTCCACGGTGGTGACGCCGCTATACAGACCTTGGATCACCTTCATGGT 402644 Query 77506 TATTTTGATAGGATCTACAAACTCGGTGTTCAAACCATAACATAATTTTCT-AATACGAG 77564 || | || || |||||||| | ||||| ||||| || || |||| ||||||| Sbjct 402643 GATCTGAGCCGGGTCCACAAACTCAGAGTTCAGGCCATAGCA-AAGCTTCTGGATACGAG 402585 Query 77565 ATGTGATTTTATCAAACATGACA 77587 | ||||||||||| ||||||||| Sbjct 402584 AGGTGATTTTATCGAACATGACA 402562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712668965611200