Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq226 123 6e-23 seq7633 111 4e-19 seq68 98.7 2e-15 seq2815 96.9 8e-15 seq1233 87.8 4e-12 >seq226 Length=808630 Score = 123 bits (136), Expect = 6e-23 Identities = 159/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| ||||| || ||||||||||| |||| | || | |||||| Sbjct 361788 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 361729 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || ||||||||||| |||||||||||||| | | ||| |||||||| || Sbjct 361728 TCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 361669 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || |||||| | || | | |||| ||| ||| || || || || || Sbjct 361668 TGGATCTTGGCCTTGACATTTTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 361612 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| ||||| ||||| || || | |||||| || Sbjct 361611 GTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATGTT 361574 >seq7633 Length=1847 Score = 111 bits (122), Expect = 4e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || || || || ||||||| ||| |||| | || | | |||| Sbjct 1766 AGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGACAGGGTCCGGCTATCT 1707 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || |||||| || || || |||||||||||||| | | ||| ||||| || || Sbjct 1706 TCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTGTCC 1647 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || ||| || ||||||| | |||| ||| || || || || || || Sbjct 1646 TGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCACCTCCAGCGTGATGGTC 1587 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 || || ||||| ||||||||||||| ||||| Sbjct 1586 TTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 >seq68 Length=2311667 Score = 98.7 bits (108), Expect = 2e-15 Identities = 154/219 (70%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || || || || | ||||||||| |||| | || | | |||| Sbjct 1552580 AGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGACAGGGTCCGGCTATCT 1552521 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| || || || || || ||||||||||| | | ||| ||||| ||||| Sbjct 1552520 TCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCTTTTTCC 1552461 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || ||||||| | |||| ||| || || | || || || Sbjct 1552460 TGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCCACCTCCACCGTGATGGTC 1552401 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACC 152110 || || ||||| |||||||| |||| |||||| |||||| Sbjct 1552400 TTACCAGTGAGGGTCTTCACAAAGATCTGCATGTTTACC 1552362 >seq2815 Length=13304 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||| || ||| | || |||||||||||||||| | || | |||||| Sbjct 329 AGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCT 270 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || | ||||||||| |||||||||||||| | | |||||||||||| || Sbjct 269 TCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCC 210 Query 152013 TGAATTTT 152020 || || || Sbjct 209 TGGATCTT 202 Score = 96.9 bits (106), Expect = 8e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||| || ||| | || |||||||||||||||| | || | |||||| Sbjct 3007 AGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCT 2948 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || | ||||||||| |||||||||||||| | | |||||||||||| || Sbjct 2947 TCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCC 2888 Query 152013 TGAATTTT 152020 || || || Sbjct 2887 TGGATCTT 2880 >seq1233 Length=91233 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || ||||| || ||| | || ||||||||||| |||| | || | |||||| Sbjct 81241 AGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 81300 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || | ||||||||| |||||||||||||| | | ||| |||||||| || Sbjct 81301 TCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCC 81360 Query 152013 TGAATTTT 152020 || || || Sbjct 81361 TGGATCTT 81368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153380478545735