Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq226 143 2e-29 seq68 140 2e-28 seq7633 131 1e-25 seq2815 89.7 4e-13 >seq226 Length=808630 Score = 143 bits (158), Expect = 2e-29 Identities = 186/256 (73%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 44083 AATAAAATTACATGATTTTTATTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGT 44142 |||||||| ||||| | | || | || || ||||| | || |||||||| || || Sbjct 361829 AATAAAAT--CATGACATCTTTTACTGCCCACCCCTCAGACGCAGGACCAGGTGGAGAGT 361772 Query 44143 GCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGC 44202 | |||||| ||||||||||| |||| || ||| | || ||||||||||| ||||| Sbjct 361771 GGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGC 361712 Query 44203 AAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAA 44262 ||||||| | |||||| || | ||| | |||||||| ||| ||||| ||| | Sbjct 361711 GAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC 361652 Query 44263 TGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTT 44322 || | |||||||| || |||||||||| || || ||||| || ||||||||||| Sbjct 361651 ATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTT 361592 Query 44323 CACGAAGATTTGCATG 44338 || || || |||||| Sbjct 361591 GACAAAAATCTGCATG 361576 >seq68 Length=2311667 Score = 140 bits (154), Expect = 2e-28 Identities = 172/234 (74%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 44105 TTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAA 44164 ||||| ||| | ||||| | || |||||||| || || ||||| | ||||||||| Sbjct 1552600 TTCATGCCCTC-CTCAGACGCAGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAG 1552542 Query 44165 TCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 |||| || || || |||||||| || || ||||| |||| | |||||| || Sbjct 1552541 TCGGACAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCA 1552482 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | ||| | ||||| |||||| ||||| ||||| || |||||||||| || Sbjct 1552481 GGAGGGATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGC 1552422 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||||||| || ||||| || |||||||||||||| ||||| |||||| Sbjct 1552421 TCCACCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATG 1552368 Score = 134 bits (148), Expect = 1e-26 Identities = 171/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCG-TGCTCTCCTTTTGGATGTTGTAAT 44165 ||| || |||||||| | || |||||||| || | || | ||||| | ||||||||| | Sbjct 1552826 CATGCCACCTCTCAGACGCAGGACCAGGTGCAGGGGTGAT-TCCTTATCGATGTTGTAGT 1552768 Query 44166 CGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTG 44225 ||| || || || |||||||| || || ||||| |||| | |||||| || | Sbjct 1552767 CGGACAGGGTCCGGCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAG 1552708 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATT 44285 ||| | ||||| |||||| ||||| ||||| || ||||||| || || | Sbjct 1552707 GAGGGATGCCTTCTTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTATCACCGTGCT 1552648 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||||||| || ||||| || |||||||||||||| ||||| | |||| Sbjct 1552647 CCACCTCCACCGTGATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTTCATG 1552595 >seq7633 Length=1847 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || |||| | || |||||||| || || ||||| ||||||| ||| || Sbjct 1785 CATGCCGCCCCTCAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTC 1726 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || || || |||||||| ||||| ||||| |||| | |||||| || | Sbjct 1725 GGACAGGGTCCGGCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGG 1666 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | ||||| || ||| ||||| |||| ||| ||||| |||| ||| || Sbjct 1665 AGGGATGCCTTCTTTGTCCTGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTC 1606 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCA 44336 |||||||| ||| || ||||| || |||||||||||||||||||| |||| Sbjct 1605 CACCTCCAGCGTGATGGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 >seq2815 Length=13304 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||||||||||| || | |||| |||||||||||||| Sbjct 3026 CATGCCACCCCTCAGACGCAGGACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATC 2967 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || || ||| | || || |||||||| | ||| ||||||| | |||||| || | Sbjct 2966 GGACAGGGTGCGGCCATCTTCAAGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGG 2907 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTT 44253 ||| | |||||||| ||| ||||| Sbjct 2906 AGGGATTCCTTCCTTGTCCTGGATCTT 2880 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 ||||||||||| || | |||| |||||||||||||||| || ||| | || || Sbjct 326 ACCAGGTGAAGGGTTGACACCTTCTGGATGTTGTAATCGGACAGGGTGCGGCCATCTTCA 267 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| | ||| ||||||| | |||||| || | ||| | |||||||| ||| Sbjct 266 AGCTGCTTGCTGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATTCCTTCCTTGTCCTGG 207 Query 44249 ATCTT 44253 ||||| Sbjct 206 ATCTT 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359859721797345