Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq42 210 3e-49 seq414 168 1e-36 seq37 138 2e-27 >seq42 Length=2906915 Score = 210 bits (232), Expect = 3e-49 Identities = 210/272 (77%), Gaps = 3/272 (1%) Strand=Plus/Plus Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACA---CCCCTTGACGTTGCTACAGACTAGAGAC 8335 ||||| || ||| | |||| ||| || |||||| |||||| | ||||| || | Sbjct 2307173 TCGGGCACGTAGAAGGACGCCATCGGGCAGGGCCCCTTCACGTTGTTGCAGACGAGCCTC 2307232 Query 8336 TGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTC 8395 || | | ||| | |||||||| |||| |||||| || |||||||||||||||||| Sbjct 2307233 TGCAGGGAGGCGGTGTTGACGATGTCGAAGCCCACGCTGCCTCCGAAGGTGCTGGGCTTC 2307292 Query 8396 CAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCC 8455 |||||| |||||||||||||| ||| ||| ||||| ||||||||||| ||||||||| Sbjct 2307293 CAGTACTCCGGGGAGCAGATGGGATTCCCCAGCAGGCCCTTGAGGGAGAAAGGAGCCCCC 2307352 Query 8456 AACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCG 8515 | ||| | || |||| ||||||||||||||||| |||||||| ||||||| | || Sbjct 2307353 ATCTCCACCATTGTCTCCCCGAAGATGGCGTTGGGCCGGGGCTTCTCCACCAGCAGGCCC 2307412 Query 8516 GTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 | ||| |||||||| || || ||||| ||||| Sbjct 2307413 GGGTAGAGCTCCACGGCGTCCACGTCGCCGTA 2307444 Score = 113 bits (124), Expect = 6e-20 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || | || ||||| ||| |||||| ||| ||||| || Sbjct 2308819 TCACCAATCAGGATGAGCCGTGACGTTTGGAAGAGTCTTTCGTCATCCCAGTCTGGGTGA 2308878 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| || || || || | ||||||||| | ||||||||| ||||| |||||| Sbjct 2308879 ACTTCCTTCAGCACGTCACAGACTCGGTTGTGTTCACGGAGCCAGATGGTGGCATACATC 2308938 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 ||||| || || ||||| ||||| ||||| || || || || | ||| || | Sbjct 2308939 ATGAGGCCGGGGACCAGRCCAAACGCCTCGTGGCCAACGGCAAAGCGCTGAGAGTCCAGG 2308998 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | || || ||| ||| | || ||| || || ||| | |||||||||| || Sbjct 2308999 ACATGAGGCGGGTAGTGCATTTCGACACCGACATCCTTAACCAACGGGGGATACACCTCT 2309058 Query 9472 CCGTCAATCATCTG 9485 || | ||||||| Sbjct 2309059 CCATTTCTCATCTG 2309072 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||| ||| || | ||| ||||| || || || || || || || || | || | Sbjct 2309786 TCACCTACGACTCCCATAGGGGTTGGGCAGTCCTGCGGCACAGGCGGAAGGGCTCGTGTG 2309845 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 || ||||| | |||||| | |||||||||||| ||| ||||||| || ||||| | Sbjct 2309846 TAGTAGGACAAGTTGGAGTAGGCTTCCCAGCTTTTGTAACCGTAGTCGGCATTGTAAGTT 2309905 Query 10028 GGAGGGCTGTCAATCAAATCGGATC 10052 ||||| ||||| ||||| | ||||| Sbjct 2309906 GGAGGACTGTCGATCAAGTGGGATC 2309930 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/168 (72%), Gaps = 2/168 (1%) Strand=Plus/Plus Query 9070 TCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATTTTGG 9129 || ||||| || | |||||||| |||| | |||| |||||||| || || |||||| Sbjct 2308367 TCGGGCATCAGCGGGTGCCAGTGGTACAGCGTGTTGAACTCGGACGCGATGCGGTTTTGG 2308426 Query 9130 TACTGGAA-CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTGAAAATGGTAGCC 9188 |||||||| || | | |||||||| ||||| | |||| |||| || ||||| || Sbjct 2308427 TACTGGAAGCGCTG-GCTGAAGAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTGGTACCC 2308485 Query 9189 GCTGAGCTGCTGAACGTATTGCGTCACGATAATGTTGATGGTTTCCCC 9236 || || ||||| ||||| | | | | ||| |||||||| || || Sbjct 2308486 ACTCAGGTGCTGCACGTAATCCTCGATCACAATCTTGATGGTCTCACC 2308533 >seq414 Length=443506 Score = 168 bits (186), Expect = 1e-36 Identities = 186/248 (75%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 8303 GGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCG 8362 ||||||| |||| |||| ||| || || || | ||| | | |||||||| || Sbjct 420191 GGACACCACTTGGTGTTGAGACACACCAGCTTCTTCAGAGTGGACGTTTTGACGATGTCG 420132 Query 8363 AACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTC 8422 || ||| || || |||||||||||||||||||||||| | |||||| |||| ||| Sbjct 420131 AAGCCCGTCTCCCCTCCGAAGGTGCTGGGCTTCCAGTACTCAGGGGAGTTGATGGGGTTG 420072 Query 8423 GCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATG 8482 ||| |||||||| |||||||| ||||| |||| ||| | ||||||||||| || || Sbjct 420071 CCCAGCAGGCCTTTCAGGGAGAAGGGAGCACCCATCTCCACCATGCTCTCACCAAAAATA 420012 Query 8483 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCT 8542 ||||||||||| || |||| || || |||| ||| | ||||| ||| |||| |||| Sbjct 420011 AAGTTGGGACGGGTTTTCTCCAGCATGAGGCCGGGGTAAAACTCCAGAGCGTCGATGTCT 419952 Query 8543 CCGTAAAG 8550 ||||| || Sbjct 419951 CCGTAGAG 419944 Score = 131 bits (144), Expect = 2e-25 Identities = 129/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || |||||||||||||||| || |||||||| || |||||||| ||| |||||| Sbjct 416970 TCACCGATAATGATGAGTCTGGTAGTCTGGAAAAGCTGCTCGTCGTCCCAGGTGGGATGT 416911 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| ||||| || || || || |||||||| ||||||||||||| ||||||||||| Sbjct 416910 TCTGCCTTCAGGACGTCACAGACTCTGTTGTGCTCCCTGAGCCAGACGGTGGCGTACATG 416851 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9398 |||| || || | |||||| || |||| || |||| ||||| || Sbjct 416850 GTGAGGCCCGGCAGCAGGCCGAACACCTCCTGCCCGATGGCCAGGCG 416804 >seq37 Length=2935640 Score = 138 bits (152), Expect = 2e-27 Identities = 184/256 (72%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| |||||||| || |||||||||||||| ||||||||| ||| |||||| Sbjct 1370615 TCACCGATGATGATGAGGCGTGTGGTCTGGAACAGCTGCTCGTCATCCCAGGTGGGATGT 1370556 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 ||| |||||| | || || || | ||| || ||||||||||| | |||||||||||| Sbjct 1370555 TCTGCTTTCAGGATGTCACAGACACGGTTATGCTCCCTGAGCCACAGCGTGGCGTACATC 1370496 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGC 9411 | ||||| | ||| ||||| |||| ||||||| |||| | | | |||| Sbjct 1370495 CCCAAACCAGGAAGCAGTCCAAACACCTCCTGACCGATGGCCATCTGACTCTGGACGGGG 1370436 Query 9412 ACTTCGGGAGGATAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCA 9471 || | |||||| ||| |||| || | | || || ||||| ||| |||| || Sbjct 1370435 ACGTTGGGAGGGTAGCTCATCCTGACGGGAGCATCAACAACGGAGGGAGGAAACATCTCT 1370376 Query 9472 CCGTCAATCATCTGAT 9487 || ||||||| ||||| Sbjct 1370375 CCATCAATCAACTGAT 1370360 Score = 95.1 bits (104), Expect = 2e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 || ||||| |||| || || | || || |||||||||||||||||||| | || || Sbjct 1375166 TTTACGATGTCGAAGCCAACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAATCTGGAGAA 1375107 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| |||| ||||||| || ||||| || || || || |||| || | ||||| Sbjct 1375106 CAGATGGGGTTCCCCATGAGACCCTTGAGAGAAAAGGGGGCGCCCATTTCCACCATGCTT 1375047 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || || | |||| |||| | || |||| || ||||||| || | || | Sbjct 1375046 TCTCCAAATACGGCGCCCTGACGCGTTTTCTCCAGCAGTAATCCGGGATAAAATTCAAGC 1374987 Query 8531 GCCTCGACGTCTCCGTAAAG 8550 | |||| ||| ||||| || Sbjct 1374986 GTGTCGATGTCACCGTACAG 1374967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716609897806400