Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq226 145 2e-29 seq7633 138 3e-27 seq13 113 1e-19 seq2815 104 6e-17 seq74 84.2 5e-11 >seq226 Length=808630 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| || || || ||||| || || || |||||||| |||||||| || ||| Sbjct 361580 CAGATTTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 361637 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || || ||||| ||||| |||||||| ||||| |||||||| ||||||| Sbjct 361638 ACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCAGC 361697 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| |||||||| | || || |||| || ||| Sbjct 361698 AGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAACA 361757 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 361758 TCCAGAAGGAGTCCACTCTCCACCTGGT 361785 >seq7633 Length=1847 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || ||||| || || || ||||| || |||||||| | ||| Sbjct 1558 CAGATCTTCGTGAAGACCCTCACTGGTAAGACCATCACGCTGGAGGTGGAGCCCGATGAC 1617 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 | ||| |||| || ||| ||||| |||||||||||||| |||||||| |||||||| Sbjct 1618 AACATAGAGACAGTGAAAGCTAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGCAG 1677 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || || || || || |||||||| |||||| | |||| || |||| || || || Sbjct 1678 AGGCTGATTTTTGCTGGGAAACAGCTGGAAGATAGCCGGACCCTGTCCGACTACGACATC 1737 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || |||||||| || || || || Sbjct 1738 CAGAAGGAATCAACCCTCCACCTGGT 1763 Score = 100 bits (110), Expect = 7e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||||||||| |||||||| |||||||| | || || || || || ||| Sbjct 1411 AAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTGATTTTTGCTGGGAAA 1470 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| |||||| | |||| || | || || ||| |||| || |||||||| || || Sbjct 1471 CAGCTGGAAGATAGCCGGACCCTGTCAGACTACAACATCCAGAAGGAATCAACCCTCCAC 1530 Query 178125 CTTGT 178129 || || Sbjct 1531 CTGGT 1535 >seq13 Length=4660326 Score = 113 bits (124), Expect = 1e-19 Identities = 112/143 (78%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 177936 AAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--GACACCATCGAGA 177993 || |||||||| |||||||| |||||||| |||||||| ||||| |||||||| |||| Sbjct 4659933 AAGACTCTCACTGGAAAAACTATCACCCTGGAGGTGGA--GCTCAATGACACCATAGAGA 4659990 Query 177994 ACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCT 178053 ||| || ||||| |||||||||||||| |||||||| |||||||| | || || | Sbjct 4659991 CCGTGAAGGCTAAGATCCAGGACAAAGAAGGCATCCCTCCTGACCAGCAGAGGCTGATTT 4660050 Query 178054 TCGCCGGAAAACAGCTCGAAGAT 178076 | || |||| ||| ||||| Sbjct 4660051 TTATTGGCAAACGGCTGAAAGAT 4660073 >seq2815 Length=13304 Score = 104 bits (114), Expect = 6e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| |||||||||||||| |||||||| | || ||||||||| | || Sbjct 202 AAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGCAGAGGCTGATCTTCGCCAGCAAG 261 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| |||||||| | || || ||||||| ||| |||| || | ||||| || || Sbjct 262 CAGCTTGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGTGTCAACCCTTCAC 321 Query 178125 CTTGT 178129 || || Sbjct 322 CTGGT 326 Score = 104 bits (114), Expect = 6e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| |||||||| |||||||||||||| |||||||| | || ||||||||| | || Sbjct 2880 AAGATCCAGGACAAGGAAGGAATCCCTCCTGACCAGCAGAGGCTGATCTTCGCCAGCAAG 2939 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| |||||||| | || || ||||||| ||| |||| || | ||||| || || Sbjct 2940 CAGCTTGAAGATGGCCGCACCCTGTCCGATTACAACATCCAGAAGGTGTCAACCCTTCAC 2999 Query 178125 CTTGT 178129 || || Sbjct 3000 CTGGT 3004 >seq74 Length=2059002 Score = 84.2 bits (92), Expect = 5e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 178022 AGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG 178081 |||||||||||| || ||||| || || |||||||| ||||||||||| ||||||||| | Sbjct 1725247 AGGAATCCCTCCTGATCAGCAGCGTCTGATCTTCGCTGGAAAACAGCTTGAAGATGGACG 1725306 Query 178082 GACTCTTGCCGATTATAACGTCCAAAAAG 178110 || || | || || ||| |||| |||| Sbjct 1725307 CACACTGTCAGACTACAACATCCAGAAAG 1725335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203271831723290