Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Austrofundulus_20limnaeus_20[refseq_20GCF_5F001266775.1_202015-07- 28] 29,785 sequences; 866,963,281 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq226 138 1e-27 seq68 105 6e-18 seq7633 89.7 5e-13 seq244 87.8 2e-12 seq18886 82.4 7e-11 >seq226 Length=808630 Score = 138 bits (152), Expect = 1e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| || || ||| ||||||||| ||||| |||||||| |||||||| Sbjct 361794 AGACGCAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 361735 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||||||||| ||||| | ||| ||||| | || | || ||| Sbjct 361734 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCC 361675 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||| | | ||||| || | ||||||||||| || Sbjct 361674 TTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCCACCTCCAGGGTG 361615 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || || || ||||| || |||||||||||||| Sbjct 361614 ATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATGTT 361574 >seq68 Length=2311667 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||||| | ||||| |||||||| ||||| || Sbjct 1552586 AGACGCAGGACCAGGTGCAGGGTTGATTCCTTATCGATGTTGTAGTCGGACAGGGTCCGG 1552527 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 || || ||||| ||||| || || ||||| | ||| ||||| | || | || || Sbjct 1552526 CTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTCT 1552467 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | | | ||||| | ||||||||||||||| Sbjct 1552466 TTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTGTCACCGTGCTCCACCTCCACCGTG 1552407 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| || || ||||| || || ||||||||||| Sbjct 1552406 ATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTGCATGTT 1552366 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCG-TGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCG 41703 ||||| | ||||| ||||| | || | ||||| | ||||| |||||||| ||||| || Sbjct 1552813 AGACGCAGGACCAGGTGCAGGGGTGAT-TCCTTATCGATGTTGTAGTCGGACAGGGTCCG 1552755 Query 41704 CTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTC 41763 || || ||||| ||||| || || ||||| | ||| ||||| | || | || || Sbjct 1552754 GCTATCTTCCAGCTGTTTGCCAGCAAAAATCAGTCTCTGCTGGTCAGGAGGGATGCCTTC 1552695 Query 41764 CTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGT 41823 || ||| ||| || ||||| | | | || || | ||||||||||||||| Sbjct 1552694 TTTTTCCTGGATCTTAGCCTTCACGGTCTCTATGGTATCACCGTGCTCCACCTCCACCGT 1552635 Query 41824 TATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || ||||| || || ||||| || || |||| |||| Sbjct 1552634 GATGGTCTTACCAGTGAGGGTCTTCACAAAGATCTTCATG 1552595 >seq7633 Length=1847 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | | ||| | ||||| || || || |||||||| |||| |||||||| Sbjct 1782 GCCGCCCCTCAAACGCAGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTCGTAGTCGGA 1723 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||| || || || ||||| || || || || ||||| | ||| ||||| | || Sbjct 1722 CAGGGTCCGGCTATCTTCCAGCTGTTTCCCAGCAAAAATCAGCCTCTGCTGGTCAGGAGG 1663 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || || |||||| ||| || |||| | | | |||| | |||||| Sbjct 1662 GATGCCTTCTTTGTCCTGGATCTTAGCTTTCACTGTCTCTATGTTGTCATCGGGCTCCAC 1603 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCA 41861 ||||| ||| || || ||||| || || ||||| ||||| ||||||| Sbjct 1602 CTCCAGCGTGATGGTCTTACCAGTGAGGGTCTTCACGAAGATCTGCA 1556 >seq244 Length=814671 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 41644 TAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCG 41703 |||||| | ||||| || || || | ||||||| ||| | |||||||| |||||||| Sbjct 499805 TAGACGCAGGACCAGGTGAAGGGTAGACACCTTCTGGATGGTGTAGTCGGACAGGGTGCG 499746 Query 41704 CTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTC 41763 | || || ||||||||||||| ||| ||||| | ||| ||||| | || | || ||| Sbjct 499745 GCCATCTTCAAGCTGCTTGCCGGTGAAGATCAGCCTCTGCTGGTCAGGAGGGATGC-CTC 499687 Query 41764 CTTGTCCATGATTTT 41778 || |||| ||| || Sbjct 499686 CTCGTCCTGGATCTT 499672 >seq18886 Length=299 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| || || || | ||||||| ||||| ||||||| |||||||| | || || Sbjct 225 ACCAGGTGAAGGGTTGACACCTTCTGGATGTTGCAGTCGGACAGGGTGCGGCCATCTTCA 166 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC 41748 ||||||||||||||||| ||||| | ||| ||||| Sbjct 165 AGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTC 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462131878442000