Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq9898 616 2e-171 seq11381 123 3e-23 seq11714 122 1e-22 seq9943 96.9 4e-15 >seq9898 Length=4754808 Score = 616 bits (682), Expect = 2e-171 Identities = 1307/1944 (67%), Gaps = 19/1944 (1%) Strand=Plus/Minus Query 53085 TATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 53144 ||||||| || || |||||||| | | | || || | | | || ||||| || | Sbjct 101371 TATTCTTCATTTCCTCATTCCACAGTCCCCGTTCAGTCAGGTCCTTGAGCAGATGTGGGT 101312 Query 53145 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 53204 | || | ||||| ||||| || | ||||| || ||||| || || ||||| || | || Sbjct 101311 TTACAATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCTT 101252 Query 53205 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264 | | |||||||| || || | ||||| || || || ||||| ||||| || |||| || Sbjct 101251 CGATGGACTCATTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTAGGCATGGGGGCCAACA 101192 Query 53265 ATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAA 53324 | | || || || | ||| | | | | || || || || || | | ||| | ||| | Sbjct 101191 ACAGGCTGTTCCTCACACCATGTTTAGTAATCTTCTCCTTAAGCAGCTTCCAGTCCCAGA 101132 Query 53325 GATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATC 53384 | | | ||| || ||| ||||| || ||||| | || | Sbjct 101131 GCGCAGTCGGCACCTTCTCCCACATGTCGTATTGCAGAATGCCCTTACTCACTGGAGAAC 101072 Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444 || ||||| || || || || || || || |||| || || || ||||| | || Sbjct 101071 CTGGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCAGCTTGCCTCCAGGGCGG 101012 Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 |||| || || || || ||||||| | || || || ||||| | || ||||||| Sbjct 101011 CGTAGTATATTGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCTTCAGGACTTTCAAATG 100952 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 ||||| | |||||| || || ||||| | || || || ||||| ||||| || || | Sbjct 100951 GATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCCAATTCCGATTGGCCTGT 100892 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | | ||| || ||| | || ||||| || | || || || ||||| || || || || | Sbjct 100891 GGCGCTTGTTCGAGTTCTCGGCTTCAGGGACTGGGTAGTAGTTAATGTCAATGATCTTGT 100832 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 |||||||||| ||||||||||| ||| || || || ||||| |||| | Sbjct 100831 TGAGGTTTCTTACAATTACTTTAGTGACAGAGGCAAGCTTTTTGAAGTCAAAG-GTCCGT 100773 Query 53685 -CTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT-- 53738 || | ||| ||||||| | |||||||| |||| ||||| ||||||||||||| Sbjct 100772 TCTGGAGTAACATACATGTTAAGAGCAATAGAAGCCAAGTTACAGACGGCTACCTCATCT 100713 Query 53739 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798 | || | | ||| | | ||||||||||| | ||||| || ||||| || || |||| Sbjct 100712 TTGCTT--GTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATAGTGCCCAAAT 100655 Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858 | || ||||||||||| ||||||| ||||| || || | ||| | || || || |||| Sbjct 100654 TCTGCTGATTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGAGTTCCTGTTT 100595 Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATC 53918 || |||| || ||||| || || | ||| || ||||||| | | ||| || Sbjct 100594 CAGTCTGAGACTCTATGATGGCATACCACACCTGCTGAGCCTTGACCACCCGTTTCACTC 100535 Query 53919 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978 | ||| ||||| | || |||| |||||||| || |||||| | |||| Sbjct 100534 TGCCTTCCTGCTCGTAGCGAGTGTACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCA 100475 Query 53979 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 54038 ||||| || ||| || |||||||| ||||| || || | | ||| | |||| Sbjct 100474 GCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCA 100415 Query 54039 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTT 54097 | || | |||||| ||||| || || ||| || || |||| | || || ||||| || Sbjct 100414 TGAACAAATCAGGGATCCATAGGGC-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTA 100356 Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157 || || ||||| || | || ||||| | | | ||| | ||||| || || | ||| Sbjct 100355 CCAGTGTTCTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCATGGCTCAAGGTAC 100296 Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217 |||| | | ||||| ||||| || || || || || | ||| | || ||||| || Sbjct 100295 ATGGCAAAGGCACCAGGTCGTTTATTGCCACCTTGGTCCACGTAGCGCGCCGTGTTGTTG 100236 Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277 || || |||| |||||| | || ||||| || |||||| || || | || |||||| Sbjct 100235 TACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTCCAGCAATGTAGCTT 100176 Query 54278 CCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 || | | | ||| |||| || || ||| ||||| ||||| ||| ||||| | Sbjct 100175 CCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAGATTTGGAGATGAGA 100116 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 |||||| |||| | |||||||| ||||| || || || |||||| ||||| || || Sbjct 100115 GCGCATTGTTTGAGTGTATCATAAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGG 100056 Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457 || || ||||| | || | | | || || ||||| || | || ||||| || || Sbjct 100055 AAGCAACTAGAGAGCTGTGGTCTGTTGGTGCCTGCATTGAACAGAGTGGGAGAGGCATGA 99996 Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGA 54517 || ||||| || ||||| || || ||||| ||||| || |||| || ||||| || Sbjct 99995 GTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCATCAATATCAGTTTTG 99936 Query 54518 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 54577 || ||||| || || || | ||| | ||||||||| || | ||| | | |||| || Sbjct 99935 TGGATTCCAACAGCTACTCTCATGAGCATGTGCTGTGGACGCTCAGCCACCTTGCCATTG 99876 Query 54578 ATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 54637 |||||||||| |||||| || | || ||||| ||||| | || || ||||| || Sbjct 99875 ATTTTCAGCAGGTAGGAGCGCTCTAGGGTCTTAAAGCCAAAGAAATTATAAGAAAAATCC 99816 Query 54638 CGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTA--ACTACATCCATGG 54695 | || || || ||| | |||||||| || | | |||| | || | ||| | || Sbjct 99815 CTATCATAGATTATAGCAGAGTTGAGGCGGTC--TTTGTTTGCAAGGACAATATCTAGGG 99758 Query 54696 TAATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAA 54753 | ||| || || || || || || | ||| ||| ||||||||||| || | Sbjct 99757 T--CTCTTGGGAGATCATGGGGGAGTGGCGCTTGTTTAAAGGGTTGACATAGTTGAACAG 99700 Query 54754 ATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 54813 ||||| ||| || ||||| || | || || || ||||| || || || || || || || Sbjct 99699 ATCCTCCATGACGTCACTGAACACCTTCTTGGTCTCTTTATGGAGGTTGGAAACAGCAAT 99640 Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 54873 | || || |||| ||||||||| || || | || || ||||| || || || || Sbjct 99639 GCGTGCAGCCAGAAGGGCATAATCGGGGTGCTTAGTGGTTAGTGTGGCAGCAATCTCCGC 99580 Query 54874 TGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 | || |||||||| || || || || |||||| | || | |||||||| |||||||| Sbjct 99579 AGCGAGTGTGTCCAACTCCACAGTGGTCACTCCACTGTACAGACCTTGGATCACCTTCAT 99520 Query 54934 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 54993 | |||| || || | | || | ||| | || ||||| | ||| || || Sbjct 99519 TGTGATTTGTGCGGGGTCCACAAACTCCGCGTTGAGCCCGTAACAGAGCTTTTGGATTCG 99460 Query 54994 AGATGTGATTTTATCAAACATGAC 55017 ||| |||||||||||||||||||| Sbjct 99459 AGAGGTGATTTTATCAAACATGAC 99436 Score = 107 bits (118), Expect = 2e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| || ||||| ||||| || || | |||| ||| | || ||||| ||||| |||| Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 | | ||| || || || || ||| |||| || | |||||||||||| || | || |||| Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043 | |||| |||||||||| |||||||| | | || | ||| ||||| Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGG 101494 >seq11381 Length=12543884 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| || || | ||| |||||| | || || ||||||||||| || | ||||| Sbjct 9286990 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCTTTT 9286931 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | |||||| | |||| |||||| |||||||| ||||||||||| ||||| || ||||| | Sbjct 9286930 TCAGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 9286871 Query 24277 CAATAAGTCTTTCTCC 24292 | | || |||||| || Sbjct 9286870 CCACAATTCTTTCACC 9286855 Score = 86.0 bits (94), Expect = 7e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 24631 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 24690 |||| || ||||||||||| || ||||||| ||||| || ||||| |||||||||||| Sbjct 9285226 CCACCTCCTCCACTGTCCAGAAGGATGCCTGTGCCTGCTTGTACATTTTCCAGATGTCAG 9285167 Query 24691 GATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 24745 | || || || || ||||| ||||| || | || |||| | ||| | ||| || Sbjct 9285166 GGTAATGTATGGGGAAAATCACAAACCTTCTGGGGTTTTCTTGAAGCAGTGGCTC 9285112 >seq11714 Length=3826745 Score = 122 bits (134), Expect = 1e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447 |||||| || || ||||| || | |||||||||||||||| ||||| || ||| | | Sbjct 1501522 CATATGATTCATAAGGTCCATCATGGGCAGCTAGTTCACAACTGGCCTCCAAAGCAGCAT 1501581 Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507 |||| ||||| || || |||| | || |||| || ||||| || |||||||||| Sbjct 1501582 AATATATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCTTCTTCACTTTCAAATGGAT 1501641 Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567 || | |||||| || |||||||| | || |||||||| || || |||||||| || | Sbjct 1501642 AACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAACACCGATTCCAATAGGTCTGTGGC 1501701 Query 53568 TCTTATTAGA 53577 | | ||||| Sbjct 1501702 GCATGTTAGA 1501711 Score = 95.1 bits (104), Expect = 1e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809 |||| || ||||||||||| || ||||| | |||||||| |||||||| || || ||| Sbjct 1502037 TATTCTACAATCTCAGTGCACAGGTTACTGGATTTGATGGTGCCTAAATTCTGCTGGTTA 1502096 Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869 ||||| | ||||| ||||| || || || ||| | || || || || || |||| || Sbjct 1502097 CTCTTCCTATTACATGCATCTTTGTAGAGCATGTACGGTGTCCCTGTCTCTGTCTGTGAC 1502156 Query 53870 TCTATAATCGCTTTCCA 53886 || ||||| || | ||| Sbjct 1502157 TCAATAATGGCATACCA 1502173 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 || || ||||| || | ||||| || ||||| ||||||||||| || || || || ||| Sbjct 1503114 GTGCCAGCATTGAACAGTGTAGGGGAGGCGTGAGTAAACCATTTCTCTGAGAGCAGGTTG 1503173 Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544 || ||||| || |||| ||| | ||| || |||||| || || || || | ||| | | Sbjct 1503174 TAGGTCTCAATGGCTGCGTCCACATCTTGTTTATGAATCCCAACAGCCACTCTCATGAGC 1503233 Query 54545 ATGTGCTGAGGTCTTTCA 54562 || |||||||| || ||| Sbjct 1503234 ATATGCTGAGGCCTCTCA 1503251 >seq9943 Length=499256 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||||||||| || || | ||||||||| || || ||||||||||| ||||| || || | Sbjct 292078 CCTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 292019 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| || |||| || || |||||||| ||||| || || || || || || || | Sbjct 292018 TGAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACG 291959 Query 24277 C 24277 | Sbjct 291958 C 291958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593598254337600