Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq9898 616 2e-171
seq11381 123 3e-23
seq11714 122 1e-22
seq9943 96.9 4e-15
>seq9898
Length=4754808
Score = 616 bits (682), Expect = 2e-171
Identities = 1307/1944 (67%), Gaps = 19/1944 (1%)
Strand=Plus/Minus
Query 53085 TATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGAT 53144
||||||| || || |||||||| | | | || || | | | || ||||| || |
Sbjct 101371 TATTCTTCATTTCCTCATTCCACAGTCCCCGTTCAGTCAGGTCCTTGAGCAGATGTGGGT 101312
Query 53145 TAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTT 53204
| || | ||||| ||||| || | ||||| || ||||| || || ||||| || | ||
Sbjct 101311 TTACAATCTGAAACTCTCCGGAGAGGACTCTGCGTGTGTAGATGTTGCTGGTGTAGGCTT 101252
Query 53205 CCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCA 53264
| | |||||||| || || | ||||| || || || ||||| ||||| || |||| ||
Sbjct 101251 CGATGGACTCATTGTTGCCTAGTATTTGTGCTGTGGAAGCAGTAGGCATGGGGGCCAACA 101192
Query 53265 ATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAA 53324
| | || || || | ||| | | | | || || || || || | | ||| | ||| |
Sbjct 101191 ACAGGCTGTTCCTCACACCATGTTTAGTAATCTTCTCCTTAAGCAGCTTCCAGTCCCAGA 101132
Query 53325 GATCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATC 53384
| | | ||| || ||| ||||| || ||||| | || |
Sbjct 101131 GCGCAGTCGGCACCTTCTCCCACATGTCGTATTGCAGAATGCCCTTACTCACTGGAGAAC 101072
Query 53385 CTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCAC 53444
|| ||||| || || || || || || || |||| || || || ||||| | ||
Sbjct 101071 CTGGGTATGTCTCATAAGGCCCGTCTTTTTCTGCTAACTCGCAGCTTGCCTCCAGGGCGG 101012
Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504
|||| || || || || ||||||| | || || || ||||| | || |||||||
Sbjct 101011 CGTAGTATATTGTCTCAAAGATCTGGATGTTCAGCAGCTGGGCTTCAGGACTTTCAAATG 100952
Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564
||||| | |||||| || || ||||| | || || || ||||| ||||| || || |
Sbjct 100951 GATAACGCATGAGAATGAAGGCATCTGCGAGACCCTGCACTCCAATTCCGATTGGCCTGT 100892
Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624
| | ||| || ||| | || ||||| || | || || || ||||| || || || || |
Sbjct 100891 GGCGCTTGTTCGAGTTCTCGGCTTCAGGGACTGGGTAGTAGTTAATGTCAATGATCTTGT 100832
Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684
|||||||||| ||||||||||| ||| || || || ||||| |||| |
Sbjct 100831 TGAGGTTTCTTACAATTACTTTAGTGACAGAGGCAAGCTTTTTGAAGTCAAAG-GTCCGT 100773
Query 53685 -CTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCAT-- 53738
|| | ||| ||||||| | |||||||| |||| ||||| |||||||||||||
Sbjct 100772 TCTGGAGTAACATACATGTTAAGAGCAATAGAAGCCAAGTTACAGACGGCTACCTCATCT 100713
Query 53739 TAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAAT 53798
| || | | ||| | | ||||||||||| | ||||| || ||||| || || ||||
Sbjct 100712 TTGCTT--GTATACTCCACAATCTCAGTGCACAAGTTACTGCATTTGATAGTGCCCAAAT 100655
Query 53799 TTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTT 53858
| || ||||||||||| ||||||| ||||| || || | ||| | || || || ||||
Sbjct 100654 TCTGCTGATTACTCTTCCTGTTACAGGCATCTTTGTACAACATGTAAGGAGTTCCTGTTT 100595
Query 53859 CAATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATC 53918
|| |||| || ||||| || || | ||| || ||||||| | | ||| ||
Sbjct 100594 CAGTCTGAGACTCTATGATGGCATACCACACCTGCTGAGCCTTGACCACCCGTTTCACTC 100535
Query 53919 TCTTTTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCA 53978
| ||| ||||| | || |||| |||||||| || |||||| | ||||
Sbjct 100534 TGCCTTCCTGCTCGTAGCGAGTGTACAGCTTCTCAAACTCCTCCCCCCAACACTCATCCA 100475
Query 53979 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 54038
||||| || ||| || |||||||| ||||| || || | | ||| | ||||
Sbjct 100474 GCCCAGGGCACTCACTGGGGCACATCAAAGACCAGTCCTGGTTGTTTTCCACCCTCTTCA 100415
Query 54039 TAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTT 54097
| || | |||||| ||||| || || ||| || || |||| | || || ||||| ||
Sbjct 100414 TGAACAAATCAGGGATCCATAGGGC-ATAGAAGAGGTCTCGTGCCCTCTGCTCCTCTTTA 100356
Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157
|| || ||||| || | || ||||| | | | ||| | ||||| || || | |||
Sbjct 100355 CCAGTGTTCTTCTTTAACTCAAGGAAGTCAAACACGTCAAAGTGCCATGGCTCAAGGTAC 100296
Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217
|||| | | ||||| ||||| || || || || || | ||| | || ||||| ||
Sbjct 100295 ATGGCAAAGGCACCAGGTCGTTTATTGCCACCTTGGTCCACGTAGCGCGCCGTGTTGTTG 100236
Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277
|| || |||| |||||| | || ||||| || |||||| || || | || ||||||
Sbjct 100235 TACACCCTCAGCATTGGCACAAGGCCATTTGAATTACCATTTGTTCCAGCAATGTAGCTT 100176
Query 54278 CCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337
|| | | | ||| |||| || || ||| ||||| ||||| ||| ||||| |
Sbjct 100175 CCTGTTGATCTAATGCAGCTAACTGCTACACCAATCCCTCCTGCAGATTTGGAGATGAGA 100116
Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397
|||||| |||| | |||||||| ||||| || || || |||||| ||||| || ||
Sbjct 100115 GCGCATTGTTTGAGTGTATCATAAATGCCATCAATGCTGTCATCCTTCATGGCCAGCAGG 100056
Query 54398 AAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGC 54457
|| || ||||| | || | | | || || ||||| || | || ||||| || ||
Sbjct 100055 AAGCAACTAGAGAGCTGTGGTCTGTTGGTGCCTGCATTGAACAGAGTGGGAGAGGCATGA 99996
Query 54458 GTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGA 54517
|| ||||| || ||||| || || ||||| ||||| || |||| || ||||| ||
Sbjct 99995 GTGAACCACTTCTCAGACAGCAGGTTGTAGGTCTCAATGGCTGCATCAATATCAGTTTTG 99936
Query 54518 TGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTT 54577
|| ||||| || || || | ||| | ||||||||| || | ||| | | |||| ||
Sbjct 99935 TGGATTCCAACAGCTACTCTCATGAGCATGTGCTGTGGACGCTCAGCCACCTTGCCATTG 99876
Query 54578 ATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 54637
|||||||||| |||||| || | || ||||| ||||| | || || ||||| ||
Sbjct 99875 ATTTTCAGCAGGTAGGAGCGCTCTAGGGTCTTAAAGCCAAAGAAATTATAAGAAAAATCC 99816
Query 54638 CGTTCGTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTA--ACTACATCCATGG 54695
| || || || ||| | |||||||| || | | |||| | || | ||| | ||
Sbjct 99815 CTATCATAGATTATAGCAGAGTTGAGGCGGTC--TTTGTTTGCAAGGACAATATCTAGGG 99758
Query 54696 TAATACTT--GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAA 54753
| ||| || || || || || || | ||| ||| ||||||||||| || |
Sbjct 99757 T--CTCTTGGGAGATCATGGGGGAGTGGCGCTTGTTTAAAGGGTTGACATAGTTGAACAG 99700
Query 54754 ATCCTTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTAT 54813
||||| ||| || ||||| || | || || || ||||| || || || || || || ||
Sbjct 99699 ATCCTCCATGACGTCACTGAACACCTTCTTGGTCTCTTTATGGAGGTTGGAAACAGCAAT 99640
Query 54814 TCTAGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 54873
| || || |||| ||||||||| || || | || || ||||| || || || ||
Sbjct 99639 GCGTGCAGCCAGAAGGGCATAATCGGGGTGCTTAGTGGTTAGTGTGGCAGCAATCTCCGC 99580
Query 54874 TGTCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933
| || |||||||| || || || || |||||| | || | |||||||| ||||||||
Sbjct 99579 AGCGAGTGTGTCCAACTCCACAGTGGTCACTCCACTGTACAGACCTTGGATCACCTTCAT 99520
Query 54934 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 54993
| |||| || || | | || | ||| | || ||||| | ||| || ||
Sbjct 99519 TGTGATTTGTGCGGGGTCCACAAACTCCGCGTTGAGCCCGTAACAGAGCTTTTGGATTCG 99460
Query 54994 AGATGTGATTTTATCAAACATGAC 55017
||| ||||||||||||||||||||
Sbjct 99459 AGAGGTGATTTTATCAAACATGAC 99436
Score = 107 bits (118), Expect = 2e-18
Identities = 125/169 (74%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934
|||| || ||||| ||||| || || | |||| ||| | || ||||| ||||| ||||
Sbjct 101662 TCCAGCCATAAAAGTGCATGCTGGTCAATTTGCCATAGTTTGGCTCTGCAATATGAATAT 101603
Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994
| | ||| || || || || ||| |||| || | |||||||||||| || | || ||||
Sbjct 101602 TTAGAGACTGGCTCTGGTCAATGTAGGCACCGCGGTCTGCAGCCATCTTGAGTATAGTCT 101543
Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 53043
| |||| |||||||||| |||||||| | | || | ||| |||||
Sbjct 101542 TCTGTGATATTTCCCAAACTGTTTTATACAGCTGTTTTAAATCATCTGG 101494
>seq11381
Length=12543884
Score = 123 bits (136), Expect = 3e-23
Identities = 109/136 (80%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| || || | ||| |||||| | || || ||||||||||| || | |||||
Sbjct 9286990 CCTCATCTCTGCTGATAAGTTCATTGGAATAAGTAAGACCGGGCATTAGACCCCTCTTTT 9286931
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| |||||| | |||| |||||| |||||||| ||||||||||| ||||| || ||||| |
Sbjct 9286930 TCAGCCAATAAATGGCCGCAAAGGATCCAGAGAAGAAAATTCCCTCTACAGCTGCAAATG 9286871
Query 24277 CAATAAGTCTTTCTCC 24292
| | || |||||| ||
Sbjct 9286870 CCACAATTCTTTCACC 9286855
Score = 86.0 bits (94), Expect = 7e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 24631 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCAT 24690
|||| || ||||||||||| || ||||||| ||||| || ||||| ||||||||||||
Sbjct 9285226 CCACCTCCTCCACTGTCCAGAAGGATGCCTGTGCCTGCTTGTACATTTTCCAGATGTCAG 9285167
Query 24691 GATATTGAATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATTGGTTC 24745
| || || || || ||||| ||||| || | || |||| | ||| | ||| ||
Sbjct 9285166 GGTAATGTATGGGGAAAATCACAAACCTTCTGGGGTTTTCTTGAAGCAGTGGCTC 9285112
>seq11714
Length=3826745
Score = 122 bits (134), Expect = 1e-22
Identities = 141/190 (74%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 53388 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 53447
|||||| || || ||||| || | |||||||||||||||| ||||| || ||| | |
Sbjct 1501522 CATATGATTCATAAGGTCCATCATGGGCAGCTAGTTCACAACTGGCCTCCAAAGCAGCAT 1501581
Query 53448 AATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATGGAT 53507
|||| ||||| || || |||| | || |||| || ||||| || ||||||||||
Sbjct 1501582 AATATATGGTCTCAAAAATCTGGATGTTGAGATGCTGGGCTTCTTCACTTTCAAATGGAT 1501641
Query 53508 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 53567
|| | |||||| || |||||||| | || |||||||| || || |||||||| || |
Sbjct 1501642 AACGCATGAGAATGAAGGCGTCTGCAAGACCCTGAACACCGATTCCAATAGGTCTGTGGC 1501701
Query 53568 TCTTATTAGA 53577
| | |||||
Sbjct 1501702 GCATGTTAGA 1501711
Score = 95.1 bits (104), Expect = 1e-14
Identities = 103/137 (75%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 53750 TATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTA 53809
|||| || ||||||||||| || ||||| | |||||||| |||||||| || || |||
Sbjct 1502037 TATTCTACAATCTCAGTGCACAGGTTACTGGATTTGATGGTGCCTAAATTCTGCTGGTTA 1502096
Query 53810 CTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGAT 53869
||||| | ||||| ||||| || || || ||| | || || || || || |||| ||
Sbjct 1502097 CTCTTCCTATTACATGCATCTTTGTAGAGCATGTACGGTGTCCCTGTCTCTGTCTGTGAC 1502156
Query 53870 TCTATAATCGCTTTCCA 53886
|| ||||| || | |||
Sbjct 1502157 TCAATAATGGCATACCA 1502173
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484
|| || ||||| || | ||||| || ||||| ||||||||||| || || || || |||
Sbjct 1503114 GTGCCAGCATTGAACAGTGTAGGGGAGGCGTGAGTAAACCATTTCTCTGAGAGCAGGTTG 1503173
Query 54485 TACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 54544
|| ||||| || |||| ||| | ||| || |||||| || || || || | ||| | |
Sbjct 1503174 TAGGTCTCAATGGCTGCGTCCACATCTTGTTTATGAATCCCAACAGCCACTCTCATGAGC 1503233
Query 54545 ATGTGCTGAGGTCTTTCA 54562
|| |||||||| || |||
Sbjct 1503234 ATATGCTGAGGCCTCTCA 1503251
>seq9943
Length=499256
Score = 96.9 bits (106), Expect = 4e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||||||||| || || | ||||||||| || || ||||||||||| ||||| || || |
Sbjct 292078 CCTCGTCTCTGCTGATGAGTTCGTTGGAGAAGGTCAGTCCGGGCATCAGGCCTCGTTTCT 292019
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| || |||| || || |||||||| ||||| || || || || || || || |
Sbjct 292018 TGAGCCAGAAAATGGCGGCGAAGGATCCAGAGAAGAAGATCCCCTCGACAGCGGCGAACG 291959
Query 24277 C 24277
|
Sbjct 291958 C 291958
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593598254337600
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