Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014
-12-02] 16,620 sequences; 955,752,150 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq10290 113 4e-20
seq11085 84.2 2e-11
>seq10290
Length=4455921
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | || || | ||| | ||||| || || |||||||| ||||| | |
Sbjct 2171163 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAC 2171104
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || |||| || ||||| ||||| ||| |||| || |||||||| || |||
Sbjct 2171103 AGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGA 2171044
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||||||| ||||| ||||| | | | || || | |||||||
Sbjct 2171043 ATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 2170984
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| || |||||||| || || | ||||| ||||| || |||||
Sbjct 2170983 TCCAAAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937
Score = 109 bits (120), Expect = 5e-19
Identities = 143/198 (72%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037
|||||| || || || ||||| ||||| | ||||| | | ||||| ||||| |||||
Sbjct 2173053 AGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCATCCTCAAGCTGCTTGCC 2172994
Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097
||| ||||||| || || || || ||| | |||||||||||| ||||| |||
Sbjct 2172993 AGCAAAAATAAGCCTTTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTAGCTTT 2172934
Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157
||| | | | || |||| |||||| || | |||||| || |||||||| | ||
Sbjct 2172933 CACGTTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGTTTTGCCGGTGAGGGT 2172874
Query 21158 TTTGACAAATATTTGCAT 21175
|||||||| ||||||||
Sbjct 2172873 CTTGACAAAGATTTGCAT 2172856
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|||||||||||||| || || ||||| | ||||| | | || || ||||| |||||
Sbjct 2171361 GTGGACTCCTTTTGGATATTGTAGTCGGAGAGGGTGCGCCCATCTTCAAGCTGCTTGCCG 2171302
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || | |||||||| || ||| | |||||||||||| |||||| |||
Sbjct 2171301 GCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2171242
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| || |||| ||||||| |||| || |||||||| || || | |||
Sbjct 2171241 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTT 2171182
Query 21159 TTGACAAATATTTGCAT 21175
|| ||||| || |||||
Sbjct 2171181 TTCACAAAGATCTGCAT 2171165
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
||||| || || || ||||| ||||| | ||| || || |||| || ||||| || ||
Sbjct 2173280 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCTTCGAGCTGCTTTCCA 2173221
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | || | |||||||| || ||| | |||||||||||| |||||| |||
Sbjct 2173220 GCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2173161
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | ||| || |||| ||||||| |||| || |||||||| || || | |||
Sbjct 2173160 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTT 2173101
Query 21159 TTGACAAATATTTGCAT 21175
|| ||||| || |||||
Sbjct 2173100 TTCACAAAGATCTGCAT 2173084
Score = 96.9 bits (106), Expect = 3e-15
Identities = 160/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| |||| ||| | || || | ||| | ||||| || || || ||||| ||||| |
Sbjct 2170935 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 2170876
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | ||||| ||||| ||||| ||| | || | |||||||| || |||
Sbjct 2170875 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 2170816
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||||||| ||||| || || | | | || || | |||||||
Sbjct 2170815 ATGCCTTCCTTGTCCTGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCACC 2170756
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| | ||| ||||| ||||| || | ||||| ||||| || ||||| |||
Sbjct 2170755 TCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATTG 2170705
>seq11085
Length=328877
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005
|||| |||| || | ||||||| ||| | ||||| ||||| || ||||| |||||
Sbjct 148071 TTTCTTCCTCTCAAACATAGCACCAAATGGAGGGTGGATTCCTTCTGCATGTTGTAGTCT 148012
Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061
| ||||| || |||| || ||||| || || ||| |||| ||||||||||||||
Sbjct 148011 GAGAGGGTATGACCGTCTTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGCTGGTC 147956
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422173668759920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |