Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boleophthalmus_20pectinirostris_20[refseq_20GCF_5F000788275.1_202014 -12-02] 16,620 sequences; 955,752,150 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq10290 113 4e-20 seq11085 84.2 2e-11 >seq10290 Length=4455921 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | ||| | ||||| || || |||||||| ||||| | | Sbjct 2171163 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGAATGTTGTAGTCAGAC 2171104 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || |||| || ||||| ||||| ||| |||| || |||||||| || ||| Sbjct 2171103 AGAGTGCGGCCGTCTTCGAGCTGCTTGCCGGCAAAAATCAGCCTCTGCTGATCTGGGGGA 2171044 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| ||||| | | | || || | ||||||| Sbjct 2171043 ATGCCTTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCCACC 2170984 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || |||||||| || || | ||||| ||||| || ||||| Sbjct 2170983 TCCAAAGTGATGGTCTTCCCAGTGAGGGTTTTCACAAAGATCTGCAT 2170937 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20978 AGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCC 21037 |||||| || || || ||||| ||||| | ||||| | | ||||| ||||| ||||| Sbjct 2173053 AGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGCCCATCCTCAAGCTGCTTGCC 2172994 Query 21038 CGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTT 21097 ||| ||||||| || || || || ||| | |||||||||||| ||||| ||| Sbjct 2172993 AGCAAAAATAAGCCTTTGTTGATCTGGGGGAATGCCTTCCTTGTCCTGAATCTTAGCTTT 2172934 Query 21098 CACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGT 21157 ||| | | | || |||| |||||| || | |||||| || |||||||| | || Sbjct 2172933 CACGTTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTAATAGTTTTGCCGGTGAGGGT 2172874 Query 21158 TTTGACAAATATTTGCAT 21175 |||||||| |||||||| Sbjct 2172873 CTTGACAAAGATTTGCAT 2172856 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||||||||| || || ||||| | ||||| | | || || ||||| ||||| Sbjct 2171361 GTGGACTCCTTTTGGATATTGTAGTCGGAGAGGGTGCGCCCATCTTCAAGCTGCTTGCCG 2171302 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 2171301 GCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2171242 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| ||||||| |||| || |||||||| || || | ||| Sbjct 2171241 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTT 2171182 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 2171181 TTCACAAAGATCTGCAT 2171165 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||| || || || ||||| ||||| | ||| || || |||| || ||||| || || Sbjct 2173280 GTGGATTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCGTCTTCGAGCTGCTTTCCA 2173221 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || | |||||||| || ||| | |||||||||||| |||||| ||| Sbjct 2173220 GCAAAGATCAACCTCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTC 2173161 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| ||||||| |||| || |||||||| || || | ||| Sbjct 2173160 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTCTTCCCAGTGAGGGTT 2173101 Query 21159 TTGACAAATATTTGCAT 21175 || ||||| || ||||| Sbjct 2173100 TTCACAAAGATCTGCAT 2173084 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || |||| ||| | || || | ||| | ||||| || || || ||||| ||||| | Sbjct 2170935 CCACCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 2170876 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | ||||| ||||| ||||| ||| | || | |||||||| || ||| Sbjct 2170875 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGATCTGGGGGA 2170816 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||||||| ||||| || || | | | || || | ||||||| Sbjct 2170815 ATGCCTTCCTTGTCCTGAATCTTGGCCTTAACATTTTCAATCGTGTCGCTGGGCTCCACC 2170756 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| ||||| ||||| || | ||||| ||||| || ||||| ||| Sbjct 2170755 TCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTCACAAAGATCTGCATATTG 2170705 >seq11085 Length=328877 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 20946 TTTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCC 21005 |||| |||| || | ||||||| ||| | ||||| ||||| || ||||| ||||| Sbjct 148071 TTTCTTCCTCTCAAACATAGCACCAAATGGAGGGTGGATTCCTTCTGCATGTTGTAGTCT 148012 Query 21006 GCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTC 21061 | ||||| || |||| || ||||| || || ||| |||| |||||||||||||| Sbjct 148011 GAGAGGGTATGACCGTCTTCAAGCTGCTTACCAGCAAAAATCAGTCTCTGCTGGTC 147956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422173668759920